User: rrsowmya

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rrsowmya10
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10
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New User
Location:
United States
Last seen:
2 years, 8 months ago
Joined:
5 years ago
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r*******@gmail.com

Posts by rrsowmya

<prev • 15 results • page 1 of 2 • next >
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Meta data analysis
... Hello, what methods can be used to do network analysis between RNA seq data from one I generated and some that I take from other publications. A- is it reasonable to compare such datasets? B- if so, do I re-normalize the different datasets from other labs to have a uniform normalization across diff ...
rna-seq written 2.7 years ago by rrsowmya10 • updated 17 months ago by Biostar ♦♦ 20
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Comment: C: p value determination of normalized values
... Yes, I suppose I could use the p values estimated by DESeq2 and then do a for correction on the subset of sRNA that are miRNAs. Thanks for the suggestion! ...
written 3.2 years ago by rrsowmya10
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p value determination of normalized values
... Hi, I am trying to find deferentially expression microRNAs from my dataset which has four treatments. My experiment contains 4 treatments with 3 biological reps of each, and I have already normalized my data. Now I am looking to perform multiple comparisions on my select 200 miRNAs and obtain a p-v ...
rna-seq written 3.2 years ago by rrsowmya10 • updated 3.2 years ago by i.sudbery7.0k
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Comment: C: Perl Script troubleshoot
... The link to the perl script is here http://www.pnas.org/content/104/9/3318.abstract?tab=ds ...
written 3.4 years ago by rrsowmya10
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Perl Script troubleshoot
... Hi, I am trying to run this perl script - http://www.pnas.org/content/104/9/3318.abstract?tab=ds with an input file that looks like this ta_iwgsc_7al_v1_4507683 2123 1 GTCCGGAGACGCCGGCG I have tried running this several times but the all_sRNA21.... file has same p value for all reads. This is not ...
perl written 3.4 years ago by rrsowmya10
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Comment: C: fasta header with leading zeros
... That worked just great! Thanks so much! I really appreciate your help! ...
written 4.0 years ago by rrsowmya10
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fasta header with leading zeros
... Hi, I would like to rename the sequences in my file to have leading zeros in front of the header name using unix or perl based on the number of sequences in the file. I am unable to open these files using a text editor since they are too large. Example. ``` >gmp-15 >gmp-126 >gmp-127890 t ...
fasta sequence written 4.0 years ago by rrsowmya10 • updated 4.0 years ago by 5heikki8.6k
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Comment: C: ViennaRNA package installation
... Thank you. I'm trying to install ViennaRNA-2.2.4 (the latest version) on Unix. I will try using other binaries and if the error persists try contacting the SysAdmin. ...
written 4.0 years ago by rrsowmya10
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Comment: C: ViennaRNA package installation
... Thanks. Yes the makefiles are in there. I looked through the configure log file and I get the following warning configure: WARNING: SWIG version >= 2.0.0 is required. You have 1.3.40. Would that be the issue. If so can I resolve the issue at my end? OR do I contact the system admin for it? ...
written 4.0 years ago by rrsowmya10
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ViennaRNA package installation
... I'm trying to install ViennaRNA package on my home directory like ,/configure --prefix=/home/username make install But it returns the following... *** no rule to make target 'install'. stop Can anyone tell me what seems to be the problem? ...
software error rna-seq written 4.0 years ago by rrsowmya10

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Popular Question 3.2 years ago, created a question with more than 1,000 views. For small RNA differential expression analysis

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