User: carerjose

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carerjose0
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Posts by carerjose

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Downloading the protein from the genome of a specie
... How can I download from Blast or Genbank the entire dna sequence for a specific protein in that organism?  I plan to open my files in a software and align then compare them to the DNA sequence of the protein of the species.  I want to compare it to a few DNA segments I have from the species I'm st ...
genome sequence blast dna written 2.5 years ago by carerjose0 • updated 7 months ago by Biostar ♦♦ 20
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Comment: C: How to compare contigs with an existing protein from a species ?
... Yes, that would be of so much help.  ...
written 2.5 years ago by carerjose0
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How to compare contigs with an existing protein from a species ?
... I have a few contigs and I need to compare them with a known protein of a species. I dropped the contigs in BlastX and since I got very low e-values, I need arrange and assembly them in order that the consensus of the contigs seems very similar to the know protein sequence.  Is there any software o ...
contig sequence blastx dna written 2.5 years ago by carerjose0 • updated 2.3 years ago by Biostar ♦♦ 20
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Comment: C: [homework] I was given multiple contigs in order to organize them and don't know
... Well all the given contigs in my homework were e-value > 1e-7. So what do you recommend to do with them?    Is there a way to assembly them in order to have low e-values or something.  ...
written 2.5 years ago by carerjose0
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Comment: C: [homework] I was given multiple contigs in order to organize them and don't know
... To determine which contig is real.  ...
written 2.5 years ago by carerjose0
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Comment: C: [homework] I was given multiple contigs in order to organize them and don't know
... I don't know. I think those sequences came from a PCR then he put those in blastx and got those e-values then gave it to me to see what is wrong.  ...
written 2.5 years ago by carerjose0
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Answer: A: [homework] I was given multiple contigs in order to organize them and don't know
... UPDATE: I just asked a graduate student in the lab. He told me: 1) The objective is to compare the contigs as I align them with a sequence of a protein. The more similar, the better the probability to be real. 2) If there is a group of contigs that are similar, I have to group them and compare the ...
written 2.5 years ago by carerjose0
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Comment: C: I was given multiple contigs in order to organize them and don't know what to do
... Yes a homework. I was just given multiple contigs and I have to search proteins that have those contigs and organize it in order.  ...
written 2.5 years ago by carerjose0
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[homework] I was given multiple contigs in order to organize them and don't know what to do
... The title says it all, I was given multiples contigs with high E values in order to organize them and I just simply don't know where to start.  ...
sequence contigs blast dna written 2.5 years ago by carerjose0

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