User: patroos

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patroos70
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Posts by patroos

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Comment: C: Obtaining NCBI GI Numbers from Taxonomy ID (for Entrez efetch query)
... Fantastic, this is very useful. Thanks! ...
written 4.8 years ago by patroos70
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Answer: A: Obtaining NCBI GI Numbers from Taxonomy ID (for Entrez efetch query)
... Haven't found a great solution for this. But the work-around I am using now is downloading /pub/taxonomy/gi_taxid_nucl.dmp.gz from the NCBI ftp server. The file maps GI numbers to taxonomy id, and I search it to get the GI numbers for a  given taxonomy ID.  ...
written 4.8 years ago by patroos70
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Obtaining NCBI GI Numbers from Taxonomy ID (for Entrez efetch query)
... I'm trying to automatically obtain fasta files from the NCBI nucleotide database for a list of taxonomy IDs. I know I can use Entrez's efetch but it expects a GI number, which I do not have a list of. Is there a way to fetch by taxonomy ID or a straight-forward and non-manual way to get GI numbers f ...
ncbi nucleotide entrez written 4.8 years ago by patroos70 • updated 4.5 years ago by natasha.sernova3.7k

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