Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
6
replies
2.0k
views
Getting matrix of QDs from VCF file
vcf snp
updated 11 weeks ago by • 0 • written 6.6 years ago by ▴ 510
2
votes
1
reply
246
views
Extract read position where a base is covered, and the allele at that base
read samtools bam mapping bwa
updated 6 months ago by 129k • written 6 months ago by ▴ 510
0
votes
0
replies
9.9k
views
Comment: Comment: How to download dbSNP153 vcf files in hg19/GRCH37 version
6 months ago by Jautis ▴ 510
0
votes
1
reply
264
views
Extract mapped SE and properly paired PE reads from a bam file
properly single bam end mapped paired
updated 12 months ago by ★ 1.2k • written 12 months ago by ▴ 510
0
votes
1
reply
685
views
Answer: Answer: My PCA plot looks good but i don't have differentially expressed genes
14 months ago by Jautis ▴ 510
2
votes
0
replies
521
views
Comment: Comment: Should I normalize the data before or after filtering to a particular cell type?
14 months ago by Jautis ▴ 510
4
votes
0
replies
443
views
Comment: Comment: Differntial Gene Expression analysis
14 months ago by Jautis ▴ 510
0
votes
0
replies
440
views
Comment: Comment: SNPs with multiple nucleotides
14 months ago by Jautis ▴ 510
2
votes
1
reply
440
views
Answer: Answer: SNPs with multiple nucleotides
14 months ago by Jautis ▴ 510
0
votes
1
reply
354
views
Comment: Comment: Capture Hi-C processing yields sparse matrices
14 months ago by Jautis ▴ 510
0
votes
0
replies
546
views
Comment: Comment: Alternatives to TMM normalization
14 months ago by Jautis ▴ 510
7
votes
4
replies
546
views
Alternatives to TMM normalization
voom expression R limma
14 months ago by Jautis ▴ 510
1
vote
0
replies
2.1k
views
Answer: Answer: How can I colour UMAP by sample batches
16 months ago by Jautis ▴ 510
0
votes
0
replies
1.0k
views
Comment: Comment: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
16 months ago by Jautis ▴ 510
0
votes
0
replies
430
views
Comment: Comment: Can I do differential analysis without phenodata?
16 months ago by Jautis ▴ 510
3
votes
1
reply
640
views
Answer: Answer: mutation not in RNAseq read
16 months ago by Jautis ▴ 510
1
vote
1
reply
1.0k
views
Comment: Comment: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
16 months ago by Jautis ▴ 510
0
votes
0
replies
1.3k
views
Comment: Comment: Merge two vcf's, keep only intersection of REF/ALT alleles
16 months ago by Jautis ▴ 510
0
votes
0
replies
239
views
Using bcftools to merge files of different individuals, getting only shared sites
vcf genotypes bcftools
16 months ago by Jautis ▴ 510
1
vote
2
replies
1.0k
views
Answer: Answer: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
16 months ago by Jautis ▴ 510
2
votes
3
replies
866
views
Error running smartpca from eigensoft: failed to create thread
pca genotypes smartpca eigensoft
17 months ago by Jautis ▴ 510
1
vote
0
replies
866
views
Comment: Comment: Error running smartpca from eigensoft: failed to create thread
17 months ago by Jautis ▴ 510
0
votes
1
reply
866
views
Comment: Comment: Error running smartpca from eigensoft: failed to create thread
17 months ago by Jautis ▴ 510
1
vote
0
replies
620
views
Comment: Comment: Finding a sequence
17 months ago by Jautis ▴ 510
1
vote
1
reply
2.7k
views
Comment: Comment: fastqc html file
17 months ago by Jautis ▴ 510
0
votes
1
reply
2.9k
views
Comment: Comment: multiqc could not generate results
17 months ago by Jautis ▴ 510
0
votes
0
replies
611
views
Comment: Comment: Conserved regions in multiple fasta files (multiple species)?
17 months ago by Jautis ▴ 510
0
votes
0
replies
2.7k
views
Comment: Comment: fastqc html file
17 months ago by Jautis ▴ 510
2
votes
2
replies
684
views
Trim 100bp PE sequencing to 50bp reads
unix bash sequencing fastq
updated 18 months ago by 21k • written 18 months ago by ▴ 510
0
votes
0
replies
825
views
Comment: Comment: Bam file: replace low quality bases with "N"
19 months ago by Jautis ▴ 510
2
votes
2
replies
825
views
Bam file: replace low quality bases with "N"
quality base bam
19 months ago by Jautis ▴ 510
0
votes
1
reply
1.2k
views
Comment: Comment: limma+voom flips the sign of the effect from CPM?
20 months ago by Jautis ▴ 510
1
vote
4
replies
1.2k
views
limma+voom flips the sign of the effect from CPM?
voom expression limma R
updated 20 months ago by ★ 6.1k • written 20 months ago by ▴ 510
0
votes
1
reply
1.2k
views
Comment: Comment: voom mean-variance plot has set of genes where variance increases with expressio
20 months ago by Jautis ▴ 510
0
votes
1
reply
1.2k
views
Comment: Comment: voom mean-variance plot has set of genes where variance increases with expressio
20 months ago by Jautis ▴ 510
5
votes
5
replies
1.2k
views
voom mean-variance plot has set of genes where variance increases with expression level
voom expression limma R
updated 20 months ago by ★ 6.1k • written 20 months ago by ▴ 510
0
votes
0
replies
1.6k
views
Comment: Comment: unable to impute with beagle after filtering VCF table using vcftools
2.1 years ago by Jautis ▴ 510
1
vote
1
reply
1.6k
views
Comment: Comment: unable to impute with beagle after filtering VCF table using vcftools
2.1 years ago by Jautis ▴ 510
0
votes
0
replies
758
views
Comment: Comment: Could someone help me check what genomic position is this variant nomenclature r
2.1 years ago by Jautis ▴ 510
0
votes
1
reply
2.3k
views
Comment: Comment: How to calculate percent coverage of each read for nanopore
2.1 years ago by Jautis ▴ 510
1
vote
0
replies
2.3k
views
Comment: Comment: How to calculate percent coverage of each read for nanopore
2.1 years ago by Jautis ▴ 510
0
votes
0
replies
1.2k
views
Comment: Comment: Cannot color cells with 0 expression in certain color
2.1 years ago by Jautis ▴ 510
0
votes
0
replies
437
views
Calculating Fst from low coverage data using genotype likelihoods
vcftools fst population_differentiation
2.1 years ago by Jautis ▴ 510
0
votes
0
replies
3.9k
views
Comment: C: Calculating Tajima's D from SNP frequency data
2.3 years ago by Jautis ▴ 510
0
votes
0
replies
3.5k
views
Comment: C: A strange R limma voom function mean-variance trend
2.4 years ago by Jautis ▴ 510
0
votes
0
replies
7.1k
views
Answer: A: 012 genotype matrix using vcf tools
2.5 years ago by Jautis ▴ 510
7
votes
15
replies
6.1k
views
6 follow
Modifying fasta file based on vcf information
reference-genome vcf fasta
updated 5 months ago by 39k • written 8.0 years ago by ▴ 510
0
votes
0
replies
499
views
GO based on NCBI annotation
genome enrichment GSEA GO
2.7 years ago by Jautis ▴ 510
0
votes
0
replies
1.1k
views
Comment: C: Phasing non-human genomes with Beagle - do I need to divide subjects by populati
2.9 years ago by Jautis ▴ 510
0
votes
1
reply
11k
views
Comment: C: How to remove a list of reads from fastq file?
2.9 years ago by Jautis ▴ 510
145 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6