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Comment: C: Calculating Tajima's D from SNP frequency data
3.6 years ago by Jautis ▴ 580
0
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0
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4.0k
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Comment: C: A strange R limma voom function mean-variance trend
3.7 years ago by Jautis ▴ 580
0
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0
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8.3k
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Answer: A: 012 genotype matrix using vcf tools
3.8 years ago by Jautis ▴ 580
7
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15
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7.3k
views
6 follow
Modifying fasta file based on vcf information
reference-genome vcf fasta
updated 21 months ago by 44k • written 9.3 years ago by ▴ 580
0
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0
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655
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GO based on NCBI annotation
genome enrichment GSEA GO
4.1 years ago by Jautis ▴ 580
0
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0
replies
1.3k
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Comment: C: Phasing non-human genomes with Beagle - do I need to divide subjects by populati
4.2 years ago by Jautis ▴ 580
0
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1
reply
14k
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Comment: C: How to remove a list of reads from fastq file?
4.2 years ago by Jautis ▴ 580
0
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0
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1.2k
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Convert VCF + LDhelmet Recombination Rates to EIGENSTRAT format
vcf linkage SNP genome
4.5 years ago by Jautis ▴ 580
0
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0
replies
1.1k
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find position of snps in cM, given recombination map from ldhelmet
recombination genome physical position
4.5 years ago by Jautis ▴ 580
0
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0
replies
2.7k
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Comment: C: sed (or similar) command to remove part of the FORMAT from a vcf file?
4.6 years ago by Jautis ▴ 580
2
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2
replies
2.7k
views
sed (or similar) command to remove part of the FORMAT from a vcf file?
vcf sed processing
updated 4.6 years ago by 16k • written 4.6 years ago by ▴ 580
0
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1
reply
15k
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Comment: C: How to combine chromosome vcf files
4.6 years ago by Jautis ▴ 580
0
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0
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2.7k
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Comment: C: Phylogenetic distance betwee species
updated 4.8 years ago by 44k • written 8.8 years ago by ▴ 580
2
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0
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4.7k
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Comment: C: Good Bioinformatics research papers
updated 4.8 years ago by 44k • written 8.8 years ago by ▴ 580
0
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1
reply
3.7k
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Comment: C: Taking genotypes out of a vcf file
updated 4.9 years ago by 44k • written 9.1 years ago by ▴ 580
0
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0
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13k
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Comment: C: Calculating the bisulfite conversion rate
updated 4.9 years ago by 44k • written 9.2 years ago by ▴ 580
4
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2
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13k
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Answer: A: Calculating the bisulfite conversion rate
updated 4.9 years ago by 44k • written 9.2 years ago by ▴ 580
0
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0
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1.9k
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Comment: C: vcftools minDP filter not working for samtools genotype calling output
4.9 years ago by Jautis ▴ 580
1
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2
replies
1.9k
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vcftools minDP filter not working for samtools genotype calling output
genotype filtering SNP SNP-calling
4.9 years ago by Jautis ▴ 580
0
votes
1
reply
1.1k
views
Efficiently run blat for long sequences
blat alignment sequence assembly
updated 5.0 years ago by ★ 2.5k • written 5.0 years ago by ▴ 580
1
vote
1
reply
1.5k
views
Annotate CpG Islands for a new genome
CpG assembly annotation
updated 5.4 years ago by ★ 3.7k • written 5.4 years ago by ▴ 580
1
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8
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2.7k
views
Error in transferring annotations to a new assembly using RATT
alignment annotation software error Assembly
updated 5.6 years ago by 35k • written 5.7 years ago by ▴ 580
0
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2
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2.7k
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Comment: C: Error in transferring annotations to a new assembly using RATT
5.7 years ago by Jautis ▴ 580
0
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2
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2.7k
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Comment: C: Error in transferring annotations to a new assembly using RATT
5.7 years ago by Jautis ▴ 580
2
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1
reply
2.7k
views
Create a pseudo-haploid fasta file based genotype calls for an individual (vcf file)
vcf sequence assembly SNP
updated 5.8 years ago by ★ 1.6k • written 5.8 years ago by ▴ 580
0
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0
replies
1.1k
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Find SNPs which disrupt CpG sites
vcf genome variants
5.9 years ago by Jautis ▴ 580
0
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0
replies
1.5k
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Determine the derived allele
alignment
6.1 years ago by Jautis ▴ 580
0
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0
replies
2.8k
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Comment: C: GOseq with non-supported organism
6.1 years ago by Jautis ▴ 580
1
vote
2
replies
2.8k
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GOseq with non-supported organism
GO GOseq R
6.1 years ago by Jautis ▴ 580
0
votes
1
reply
1.6k
views
Comment: C: Find chromosomal location of a scaffold
6.1 years ago by Jautis ▴ 580
0
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1
reply
1.6k
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Comment: C: Find chromosomal location of a scaffold
6.1 years ago by Jautis ▴ 580
1
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5
replies
1.6k
views
Find chromosomal location of a scaffold
genome mapping
updated 6.1 years ago by 35k • written 6.1 years ago by ▴ 580
0
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1
reply
3.9k
views
Comment: C: Convert an altered sam file into a bam file
6.7 years ago by Jautis ▴ 580
3
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4
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3.9k
views
Convert an altered sam file into a bam file
sam bam sequencing
6.7 years ago by Jautis ▴ 580
0
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0
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1.8k
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BSMap to Bismark bam file formats
next-gen sequencing bam bisulfite
6.8 years ago by Jautis ▴ 580
0
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0
replies
1.3k
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Comment: C: Genotype calls for a list of variable sites
6.9 years ago by Jautis ▴ 580
0
votes
2
replies
1.3k
views
Genotype calls for a list of variable sites
genotype-calling GATK variant-calling
updated 6.9 years ago by 163k • written 6.9 years ago by ▴ 580
1
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0
replies
7.3k
views
Comment: C: Modifying fasta file based on vcf information
7.3 years ago by Jautis ▴ 580
10
votes
4
replies
6.3k
views
Comparing two phylogenies
covariance phylogeny tree
updated 2.0 years ago by 44k • written 9.0 years ago by ▴ 580
0
votes
1
reply
2.0k
views
Comment: C: Outputting DP4 flag in GATK
7.4 years ago by Jautis ▴ 580
2
votes
3
replies
2.0k
views
Outputting DP4 flag in GATK
variant calling sequencing gatk
updated 7.4 years ago by 5.8k • written 7.4 years ago by ▴ 580
0
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1
reply
1.7k
views
Comment: C: Getting reads that end at a digest site from a sam/bam file
7.5 years ago by Jautis ▴ 580
0
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0
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1.7k
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Comment: C: Getting reads that end at a digest site from a sam/bam file
7.5 years ago by Jautis ▴ 580
0
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7
replies
1.7k
views
Getting reads that end at a digest site from a sam/bam file
bisulfite digest
updated 7.5 years ago by 163k • written 7.5 years ago by ▴ 580
0
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1
reply
1.7k
views
Comment: C: Getting reads that end at a digest site from a sam/bam file
7.5 years ago by Jautis ▴ 580
0
votes
1
reply
1.9k
views
Calling allele-specific methylation from bisulfite sequencing reads
bisulfite-sequencing allele-specific sequencing
updated 7.6 years ago by 14k • written 7.6 years ago by ▴ 580
1
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1
reply
6.0k
views
Comment: C: Downsampling bam file to 2x coverage
7.7 years ago by Jautis ▴ 580
0
votes
1
reply
4.0k
views
Comment: C: Numbers of Samples per Lane in RNAseq
7.7 years ago by Jautis ▴ 580
0
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2
replies
6.0k
views
Comment: C: Downsampling bam file to 2x coverage
7.7 years ago by Jautis ▴ 580
0
votes
1
reply
4.0k
views
Comment: C: Numbers of Samples per Lane in RNAseq
7.7 years ago by Jautis ▴ 580
152 results • Page 2 of 4
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