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1.3k
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high coverage but few genotype calls: possible causes?+
genotype calling sequencing SNP
7.9 years ago by Jautis ▴ 530
3
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4
replies
5.7k
views
Compare tree topologies (Newick)
tree phylogeny gene
updated 8.1 years ago by ★ 3.0k • written 8.1 years ago by ▴ 530
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1
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5.7k
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Comment: C: Compare tree topologies (Newick)
8.1 years ago by Jautis ▴ 530
0
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1
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1.5k
views
Check for Msp1 digestion in sequencing data
RRBS digestion bisulfite-sequencing msp1
updated 20 months ago by 43k • written 8.3 years ago by ▴ 530
0
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0
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2.5k
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Genome sites from BPM file
illumina location bpm
updated 20 months ago by 43k • written 8.4 years ago by ▴ 530
2
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2
replies
2.6k
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Phylogenetic distance betwee species
phylogenetics newick trees
updated 20 months ago by 43k • written 8.4 years ago by ▴ 530
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0
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2.2k
views
Comment: Comment: Fst from 012 genotype matrix
updated 19 months ago by 43k • written 8.5 years ago by ▴ 530
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2
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2.2k
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Fst from 012 genotype matrix
Fst Genotype
updated 19 months ago by 43k • written 8.5 years ago by ▴ 530
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0
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6.1k
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Comment: Comment: Is there a software that can compare phylogenetic trees to each othe (face to fa
updated 19 months ago by 43k • written 8.6 years ago by ▴ 530
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0
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3.5k
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Comment: C: Taking genotypes out of a vcf file
8.7 years ago by Jautis ▴ 530
2
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6
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3.5k
views
Taking genotypes out of a vcf file
vcf
updated 18 months ago by 43k • written 8.7 years ago by ▴ 530
1
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0
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4.6k
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Comment: Comment: Using PhiX to estimate bisulfite conversion rate
updated 17 months ago by 43k • written 8.8 years ago by ▴ 530
1
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1
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1.6k
views
Answer: Answer: Visually display genomic location of a list of genes
updated 17 months ago by 43k • written 8.8 years ago by ▴ 530
1
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0
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13k
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Comment: C: Calculating the bisulfite conversion rate
8.8 years ago by Jautis ▴ 530
1
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1
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13k
views
Comment: Comment: Calculating the bisulfite conversion rate
updated 17 months ago by 43k • written 8.8 years ago by ▴ 530
0
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1
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2.2k
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Comment: Comment: List or database of regulatory SNPs
updated 17 months ago by 43k • written 8.8 years ago by ▴ 530
1
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2
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13k
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Comment: Comment: Calculating the bisulfite conversion rate
updated 17 months ago by 43k • written 8.8 years ago by ▴ 530
0
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1
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13k
views
Comment: Comment: Calculating the bisulfite conversion rate
updated 17 months ago by 43k • written 8.8 years ago by ▴ 530
4
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3
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2.2k
views
Making a haploid genome
vcf haploid-genome variant
updated 16 months ago by 43k • written 8.8 years ago by ▴ 530
0
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1
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2.1k
views
Comment: Comment: RRBS 5' trimming
updated 16 months ago by 43k • written 8.8 years ago by ▴ 530
0
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1
reply
2.6k
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Masking Variable Sites in a Fasta File
fasta vcf
updated 16 months ago by 43k • written 8.8 years ago by ▴ 530
0
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1
reply
3.0k
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Finding differences between 2 fasta files
fasta
updated 16 months ago by 43k • written 8.8 years ago by ▴ 530
0
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0
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1.7k
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Comment: C: total number of peaks vs putative peaks
8.8 years ago by Jautis ▴ 530
6
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4
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2.6k
views
Help simulating RRBS reads
methylation RRBS
updated 15 months ago by 43k • written 8.9 years ago by ▴ 530
0
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1
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7.0k
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Comment: C: Modifying fasta file based on vcf information
8.8 years ago by Jautis ▴ 530
0
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1
reply
1.7k
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Comment: C: total number of peaks vs putative peaks
8.8 years ago by Jautis ▴ 530
0
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1
reply
3.4k
views
Comment: Comment: p53 upregulated in cancer cell line
updated 16 months ago by 43k • written 8.8 years ago by ▴ 530
1
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1
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2.1k
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Comment: Comment: What type of Bioinformatics analysis could I perform if I have DNA sequences of
updated 16 months ago by 43k • written 8.8 years ago by ▴ 530
0
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2
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7.0k
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Comment: C: Modifying fasta file based on vcf information
8.8 years ago by Jautis ▴ 530
0
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1
reply
1.7k
views
Comment: Comment: total number of peaks vs putative peaks
updated 16 months ago by 43k • written 8.8 years ago by ▴ 530
0
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0
replies
7.0k
views
Comment: Comment: Modifying fasta file based on vcf information
updated 16 months ago by 43k • written 8.9 years ago by ▴ 530
0
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0
replies
7.0k
views
Comment: Comment: Modifying fasta file based on vcf information
updated 16 months ago by 43k • written 8.9 years ago by ▴ 530
0
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2
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2.7k
views
Comment: Comment: looking for databases to download whole RNA RNA-seq data
updated 16 months ago by 43k • written 8.9 years ago by ▴ 530
0
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0
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2.4k
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Comment: C: How To Identify Targets of A Transcription Factor for Bos Taurus?
8.9 years ago by Jautis ▴ 530
0
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1
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2.7k
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Answer: Answer: looking for databases to download whole RNA RNA-seq data
updated 15 months ago by 43k • written 8.9 years ago by ▴ 530
1
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0
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31k
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Answer: Answer: Converting Sam To Bam
updated 15 months ago by 43k • written 8.9 years ago by ▴ 530
0
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0
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4.1k
views
Answer: Answer: What does a allele frequency difference between 2 populations mean ?
updated 15 months ago by 43k • written 8.9 years ago by ▴ 530
0
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1
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3.2k
views
Comment: Comment: How to get the differentially expressed genes in cancer cell lines
updated 15 months ago by 43k • written 8.9 years ago by ▴ 530
0
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1
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3.2k
views
Answer: Answer: How to get the differentially expressed genes in cancer cell lines
updated 15 months ago by 43k • written 8.9 years ago by ▴ 530
0
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0
replies
3.4k
views
Comment: Comment: SNPs, genotypes, HWE in GWAS,
updated 15 months ago by 43k • written 8.9 years ago by ▴ 530
2
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1
reply
3.4k
views
Answer: Answer: SNPs, genotypes, HWE in GWAS,
updated 15 months ago by 43k • written 8.9 years ago by ▴ 530
7
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5
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2.4k
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Filter fastq file by first two base pairs
fastq
updated 15 months ago by 43k • written 8.9 years ago by ▴ 530
0
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1
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2.4k
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Comment: C: Filter fastq file by first two base pairs
8.9 years ago by Jautis ▴ 530
6
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2
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1.5k
views
Comparing methods to genotype
RNA-Seq genotyping vcf RRBS
updated 21 months ago by 43k • written 9.0 years ago by ▴ 530
0
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0
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7.1k
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Comment: C: How can I calculate bisulfite conversion rate from RRBS data?
9.0 years ago by Jautis ▴ 530
0
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0
replies
7.1k
views
Comment: Comment: How can I calculate bisulfite conversion rate from RRBS data?
updated 22 months ago by 43k • written 9.1 years ago by ▴ 530
0
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1
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3.3k
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Comment: C: Calling SNPs from RRBS data
9.2 years ago by Jautis ▴ 530
0
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2
replies
3.3k
views
Comment: Comment: Calling SNPs from RRBS data
updated 24 months ago by 43k • written 9.2 years ago by ▴ 530
1
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6
replies
3.3k
views
Calling SNPs from RRBS data
SNP RRBS SNP-calling bisulfite-sequencing
updated 24 months ago by 43k • written 9.2 years ago by ▴ 530
0
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1
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2.9k
views
Comment: Comment: dbSNP: getting the population/country information from rs dbSNP id's
updated 24 months ago by 43k • written 9.2 years ago by ▴ 530
150 results • Page 3 of 3
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