Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
4
votes
2
replies
1.1k
views
The number of reads from the BMA file is more than the number of reads from its original FASTQ file
RNA-Seq alignment BAM FASTQ
updated 4.1 years ago by 35k • written 4.1 years ago by ▴ 480
10
votes
10
replies
8.6k
views
6 follow
htseq-count cannot find pysam
htseq-count RNA-Seq quantification HTSeq
updated 2.6 years ago by 43k • written 8.4 years ago by ▴ 480
6
votes
7
replies
6.5k
views
What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
ATAC-Seq Trimmomatic Adapter Trimming
updated 5.1 years ago by 35k • written 5.2 years ago by ▴ 480
5
votes
4
replies
11k
views
A weird PCA result using a local Galaxy
RNA-Seq PCA Principal component analysis Galaxy
updated 5.2 years ago by 104k • written 5.2 years ago by ▴ 480
5
votes
3
replies
2.3k
views
The optimal minMQS parameter in featureCounts for RNA-Seq quantification
featureCounts minMQS quantification RNA-Seq
updated 5.2 years ago by ★ 7.0k • written 5.2 years ago by ▴ 480
7
votes
5
replies
2.8k
views
Duplicated ATAC-Seq peaks called by MACS2
MACS MACS2 ATAC-Seq peak calling
updated 5.2 years ago by 12k • written 5.2 years ago by ▴ 480
2
votes
1
reply
3.4k
views
Error message produced by bowtie2 (HiC-Pro)
bowtie2 HiC-Pro HiChIP alignment
updated 6.4 years ago by ▴ 10 • written 6.9 years ago by ▴ 480
2
votes
3
replies
4.0k
views
Bowtie2-build cannot build an index
Bowtie2 index
updated 6.5 years ago by 20 • written 7.1 years ago by ▴ 480
13
votes
24
replies
4.6k
views
Error of bam-to-sam conversion using samtools
samtools TopHat2 RNA-Seq BAM SAM
updated 7.1 years ago by 141k • written 7.1 years ago by ▴ 480
0
votes
2
replies
4.4k
views
Macs2 callpeak error: IndexError: list index out of range
macs2 samtools bowtie2 ATAC-seq
7.4 years ago by Gary ▴ 480
3
votes
1
reply
3.7k
views
The scores of 5th column (integer score for display) in macs2 NAME_peaks.narrowPeak file are larger than 1000
ChIP-Seq macs2 UCSC Genome Browser bedToBigBed bed
updated 7.4 years ago by ▴ 580 • written 7.4 years ago by ▴ 480
0
votes
0
replies
1.6k
views
Abnormal coverage profile
RNA-Seq Qualimap Quality RNA degradation
7.8 years ago by Gary ▴ 480
0
votes
4
replies
3.0k
views
Failed FastQC Per sequence GC content of MeDIP Input sample
MeDIP-Seq FastQC
updated 21 months ago by 43k • written 8.3 years ago by ▴ 480
8
votes
8
replies
3.4k
views
ChIP-Seq contaminated by human tissue?
ChIP-Seq
updated 16 months ago by 43k • written 8.8 years ago by ▴ 480
4
votes
9
replies
11k
views
How to modify a gff3 file for HTSeq?
gff3 next-gen RNA-Seq HTSeq
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 480
15 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6