User: cecilia.villacorta

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50
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New User
Location:
Australia
Last seen:
3 years ago
Joined:
4 years, 5 months ago
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c*****************@gmail.com

Posts by cecilia.villacorta

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Negative IBD values
... Hi Daniel, I just came across the same problem when using KING. I am not sure why I get negative IDB values. Because of these, some pairs of samples have an IBD0 = 2 (you also have IBD0>1), which does not make sense since the maximum value should be 1. I was wondering if you figured it out? Re ...
written 3.1 years ago by cecilia.villacorta50
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Answer: A: Power analysis for SNP data
... Thanks Karl. If I am not wrong, POWSIM actually does a chi-square test. I want to test different datasets and see what is their power for estimating Fst values. ...
written 3.7 years ago by cecilia.villacorta50
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Power analysis for SNP data
... What is the best tool for Power Analysis of SNP data? I have tried POWSIM, but it has a limit of 50 loci (Ryman & Palm 2006 - Molecular Ecology Notes). Can somebody recommend another way of performing the analysis? Thanks! ...
power analysis snp powsim written 3.7 years ago by cecilia.villacorta50 • updated 2.5 years ago by Biostar ♦♦ 20
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Negative Fst values in Lositan
... Hi there, I am using Lositan to detect outlier SNPs from a set of 556 SNPs. When I first upload my dataset, I get an overall Fst value of -0.025. After running the simulation (with default settings) 40% of all SNPs are listed as outliers. When I exclude the candidate outliers I get the same Fst val ...
forum fst snp lositan written 4.4 years ago by cecilia.villacorta50 • updated 4.4 years ago by Zev.Kronenberg11k

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Popular Question 3.7 years ago, created a question with more than 1,000 views. For Negative Fst values in Lositan

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