User: jaichandpatel2

Reputation:
10
Status:
New User
Location:
India/Delhi/DIPAS-DRDO
Last seen:
3 years, 10 months ago
Joined:
4 years ago
Email:
j*************@gmail.com

Posts by jaichandpatel2

<prev • 11 results • page 1 of 2 • next >
0
votes
3
answers
3.3k
views
3
answers
Comment: C: Network visualization from a matrix (filled with 0 &1 values only) using R/bioco
... if values are between 0 to 1, then what will be the script. can we mention the edge distance. ...
written 3.9 years ago by jaichandpatel210
0
votes
2
answers
1.3k
views
2
answers
Comment: C: have anybody used DOSE package in R ??
... yeah i am using library(DOSE) ...
written 4.0 years ago by jaichandpatel210
4
votes
2
answers
1.3k
views
2
answers
have anybody used DOSE package in R ??
... >computeIC(ont = "DO", organism = "human") Error: could not find function "computeIC"   >cnetplot.internal(x, showCategory=5, categorySize="geneNum", foldChange=NULL, fixed=TRUE) Error: could not find function "cnetplot.internal" should i need of any other package ??? ...
dose cnetplot.internal computeic written 4.0 years ago by jaichandpatel210 • updated 4.0 years ago by Guangchuang Yu2.1k
0
votes
1
answer
1.6k
views
1
answers
Comment: C: multifactor microarray data sample analysis using limma package
... Hello Sir I have got p-adjusted value i.e. q-value using limma package, but how can i get the gene list of different coefficients in an ascending or descending as well in .xls format. what should be the cut off in case of q-value to select differentially expressed genes (upregulated & downregul ...
written 4.0 years ago by jaichandpatel210
0
votes
1
answer
1.6k
views
1
answers
Comment: C: Can maSigPro be used to find out differentially expressed genes from microarray
... you mean to say that rownames should be same as names of .CEL files. I have done  the same but did not get any improvement in out put. I have taken E-GEOD-35819 dataset from http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35819/samples/ I have some more datasets like this Please help if you ...
written 4.0 years ago by jaichandpatel210
1
vote
1
answer
1.6k
views
1
answer
Can maSigPro be used to find out differentially expressed genes from microarray data i.e. .CEL files.
... Can i use maSigPro package for this. As i used maSigPro package and got this error. What is meaning of this error, should i change samething in this R-script. If you have any idea then suggest me. > edesign         Time Replicate Control hypoxic Array1     3         1       1       2 Array2     ...
dis and dat masigpro script of masigpro written 4.0 years ago by jaichandpatel210 • updated 4.0 years ago by Neilfws48k
0
votes
1
answer
1.6k
views
1
answers
Comment: C: multifactor microarray data sample analysis using limma package
... Can i use maSigPro package for this. As i used maSigPro package and got this error. What is meaning of this error, should i change samething in this R-script. If you have any idea then suggest me. > edesign         Time Replicate Control hypoxic Array1     3         1       1       2 Array2     ...
written 4.1 years ago by jaichandpatel210
0
votes
1
answer
1.6k
views
1
answers
Comment: C: multifactor microarray data sample analysis using limma package
... Thank you Sir. ...
written 4.1 years ago by jaichandpatel210
0
votes
1
answer
1.6k
views
1
answers
Comment: C: multifactor microarray data sample analysis using limma package
... i have a data GSE35819. i want to analyse this data. In this data i have 18 samples (18 .CEL files) 3 cell line, 3 time points. can yoy tell me how to design matrix, contrast matrix. i have some more data of this kind. plz help as much you can.   ...
written 4.1 years ago by jaichandpatel210
0
votes
1
answer
1.6k
views
1
answers
Comment: C: multifactor microarray data sample analysis using limma package
... 9.5 Interaction Models: 2  2 Factorial Designs can you help me to understand above part ? ...
written 4.1 years ago by jaichandpatel210

Latest awards to jaichandpatel2

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1257 users visited in the last hour