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1
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3
replies
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Brain cell type deconvolution
deconvolution RNA-seq cibersortx
updated 11 months ago by ▴ 300 • written 16 months ago by ▴ 230
0
votes
3
replies
626
views
Determining transcripts for repetitive elements in RNA-seq data
transcript rna-seq stringtie
updated 18 months ago by 13k • written 18 months ago by ▴ 230
2
votes
2
replies
1.8k
views
Is there a FASTA file containing 1000 Genomes variant information to check reference alleles in VCF files?
checkvcf reference allele 1000 genomes
updated 3.3 years ago by 20 • written 4.9 years ago by ▴ 230
1
vote
3
replies
1.3k
views
Surrogate variables in eQTL studies
eqtl gtex covariates deseq2 sva
3.6 years ago by rodd ▴ 230
13
votes
7
replies
21k
views
trimming fastq files with Trimmomatic
QC RNA-Seq
updated 15 months ago by 43k • written 8.9 years ago by ▴ 230
3
votes
2
replies
831
views
Testing similarity between functional genomic annotations
garfield functional genomics genomic annotations R
4.3 years ago by rodd ▴ 230
11
votes
6
replies
1.5k
views
Effect of gene size on WGCNA
wgcna gene size gene length deseq2
updated 4.5 years ago by 19k • written 4.5 years ago by ▴ 230
6
votes
9
replies
4.0k
views
Converting mapped + unmapped BAM files to raw FASTQ (RNA-seq data)
BAM RNA-Seq fastq conversion bam2fastq
updated 5.5 years ago by 14k • written 5.5 years ago by ▴ 230
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