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Comment: Comment: Seeking Guidance on Selecting Control ChIP Sequences for nf-core/chipseq Pipelin
7 months ago by mark.ziemann ★ 2.0k
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736
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Comment: Comment: PCA for Batch effect
8 months ago by mark.ziemann ★ 2.0k
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0
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881
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Comment: Comment: Enrichment analyses (GO TERM etc)
8 months ago by mark.ziemann ★ 2.0k
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1
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881
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Comment: Comment: Enrichment analyses (GO TERM etc)
8 months ago by mark.ziemann ★ 2.0k
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1
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736
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Comment: Comment: PCA for Batch effect
8 months ago by mark.ziemann ★ 2.0k
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699
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Answer: Answer: GO Analysis Combine or Separate DEGs
9 months ago by mark.ziemann ★ 2.0k
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671
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Comment: Comment: Low RIN, novel samples
9 months ago by mark.ziemann ★ 2.0k
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1
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1.1k
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Comment: Comment: Hisat2 index genome
9 months ago by mark.ziemann ★ 2.0k
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574
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Comment: Comment: Comparison of different gene catalog abundance
9 months ago by mark.ziemann ★ 2.0k
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705
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Comment: Comment: Disease-Disease Association data
9 months ago by mark.ziemann ★ 2.0k
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0
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658
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Answer: Answer: ChIP-seq signal across bed regions
9 months ago by mark.ziemann ★ 2.0k
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1.1k
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Comment: Comment: Hisat2 index genome
9 months ago by mark.ziemann ★ 2.0k
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2.0k
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Comment: Comment: Questions regarding GSEA - clusterProfiler
9 months ago by mark.ziemann ★ 2.0k
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2
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2.0k
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Answer: Answer: Questions regarding GSEA - clusterProfiler
10 months ago by mark.ziemann ★ 2.0k
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0
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1.1k
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Comment: Comment: transcriptomic data for molecular subtyping
21 months ago by mark.ziemann ★ 2.0k
2
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0
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1.2k
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Answer: Answer: How to find GO function from GEO2R results
21 months ago by mark.ziemann ★ 2.0k
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1
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1.1k
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Answer: Answer: transcriptomic data for molecular subtyping
21 months ago by mark.ziemann ★ 2.0k
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880
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Answer: Answer: Aneuploidy analysis from WGS
21 months ago by mark.ziemann ★ 2.0k
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1
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1.4k
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Comment: Comment: Simulation of gene level methylation data
21 months ago by mark.ziemann ★ 2.0k
1
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2
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2.5k
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Answer: Answer: Geo2R troubleshooting
21 months ago by mark.ziemann ★ 2.0k
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1
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1.4k
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Answer: Answer: Simulation of gene level methylation data
21 months ago by mark.ziemann ★ 2.0k
1
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1
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2.5k
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Answer: Answer: Methods to analyze EM-seq data
21 months ago by mark.ziemann ★ 2.0k
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0
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984
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Comment: Comment: Error in mitch reports in R
22 months ago by mark.ziemann ★ 2.0k
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0
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859
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Answer: Answer: mitch analysis report priority by standard deviation
22 months ago by mark.ziemann ★ 2.0k
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1
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984
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Answer: Answer: How to get differntial Protein expression from protein abundance?
22 months ago by mark.ziemann ★ 2.0k
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0
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1.3k
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Comment: Comment: Single-end strand specific Rna-Seq: Which strand that the reads from.
2.2 years ago by mark.ziemann ★ 2.0k
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1
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1.6k
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Comment: Comment: ClusterProfiler GeneRatio demoninator not the same for all values
2.2 years ago by mark.ziemann ★ 2.0k
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0
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1.4k
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Answer: Answer: Biological replicates in RNA-seq
2.5 years ago by mark.ziemann ★ 2.0k
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1
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1.1k
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Answer: Answer: clusterprofile enrichment analysis
2.5 years ago by mark.ziemann ★ 2.0k
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0
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2.1k
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Comment: Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
2.8 years ago by mark.ziemann ★ 2.0k
3
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1
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1.8k
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Answer: Answer: What exactly are unmappable regions?
2.8 years ago by mark.ziemann ★ 2.0k
3
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1
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3.5k
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Answer: Answer: gseGO by fold-change returns errors
2.9 years ago by mark.ziemann ★ 2.0k
1
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1
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1.1k
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Comment: Comment: How can I quantify degradation of DNA present in the sample after sequencing?
2.9 years ago by mark.ziemann ★ 2.0k
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0
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1.4k
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Answer: Answer: Combining multiple datasets increases the fgsea p-value
2.9 years ago by mark.ziemann ★ 2.0k
4
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0
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2.8k
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Answer: Answer: How to create a new gene signature from RNAseq data
3.3 years ago by mark.ziemann ★ 2.0k
0
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0
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1.2k
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Comment: Comment: Finding the similarity between two arrays of sequences
3.3 years ago by mark.ziemann ★ 2.0k
1
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1
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1.1k
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Answer: Answer: Horizontal Gene Tranfer/Recombination
3.3 years ago by mark.ziemann ★ 2.0k
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0
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2.1k
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Comment: Comment: feature counts invalid parameter
3.3 years ago by mark.ziemann ★ 2.0k
3
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1
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1.1k
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Answer: Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
3.3 years ago by mark.ziemann ★ 2.0k
2
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1
reply
1.6k
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Comment: Comment: GSEA - Software or R
3.3 years ago by mark.ziemann ★ 2.0k
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1
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1.2k
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Comment: Comment: blastn command line
3.3 years ago by mark.ziemann ★ 2.0k
1
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1
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1.3k
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Answer: Answer: sequence error
3.3 years ago by mark.ziemann ★ 2.0k
2
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0
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2.1k
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Answer: Answer: GC content calculation in percentage
3.3 years ago by mark.ziemann ★ 2.0k
0
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0
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1.0k
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Answer: Answer: Pathway Enrichment Analysis according to tumor mutation burden.
3.3 years ago by mark.ziemann ★ 2.0k
0
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0
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2.6k
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Comment: Comment: How can I do an inner_join with multiple .csv files on the linux command line?
3.3 years ago by mark.ziemann ★ 2.0k
3
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2
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2.6k
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Answer: Answer: How can I do an inner_join with multiple .csv files on the linux command line?
3.3 years ago by mark.ziemann ★ 2.0k
1
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0
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1.5k
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Comment: Comment: DNA sequencing from cord blood stem cells
3.3 years ago by mark.ziemann ★ 2.0k
1
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0
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1.1k
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Comment: Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
3.3 years ago by mark.ziemann ★ 2.0k
2
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1
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1.5k
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Answer: Answer: DNA sequencing from cord blood stem cells
3.3 years ago by mark.ziemann ★ 2.0k
2
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1
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1.7k
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Answer: Answer: Accessing particular gene set with msigdbr on R
3.3 years ago by mark.ziemann ★ 2.0k
224 results • Page 1 of 5
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