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828
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Comment: C: find a correct gene symbol for lncRNA
3.6 years ago by mark.ziemann ★ 1.8k
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1
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5.1k
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Answer: A: /bin/bash/ command not found
3.6 years ago by mark.ziemann ★ 1.8k
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0
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5.1k
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Comment: C: /bin/bash/ command not found
3.6 years ago by mark.ziemann ★ 1.8k
2
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1
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3.1k
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Answer: A: RNA seq with 2 biological replicates
3.6 years ago by mark.ziemann ★ 1.8k
1
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0
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1.2k
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Answer: A: Safe to convert entrez gene id to ensembl gene id
3.6 years ago by mark.ziemann ★ 1.8k
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0
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1.1k
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Answer: A: How to decide the parameters and parameter values when running ChIP-seq Peak Cal
3.6 years ago by mark.ziemann ★ 1.8k
2
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0
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537
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Answer: A: Primer Design Validation
3.6 years ago by mark.ziemann ★ 1.8k
6
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0
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24k
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Answer: A: BWA MEM Algorithm
updated 3.7 years ago by 40k • written 8.4 years ago by ★ 1.8k
1
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0
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1.6k
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Answer: A: Software to count gene loss in batch
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 1.8k
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1
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2.4k
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Comment: C: Cell Line gene expression Analysis with multiple replicates
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 1.8k
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0
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2.5k
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Comment: C: Descrepancy with MACS model parameter for ChIP-Seq in tumor samples for Histone
updated 3.8 years ago by 40k • written 7.9 years ago by ★ 1.8k
0
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1
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1.1k
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Comment: C: Extract flanking regions from bam files based on coverage threshold
3.8 years ago by mark.ziemann ★ 1.8k
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0
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2.8k
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Answer: A: Is there an online resource with freely available transcriptomes data from?
3.8 years ago by mark.ziemann ★ 1.8k
1
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0
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647
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Answer: A: Is BWT algorithm suitable for all types of alignment task?
3.8 years ago by mark.ziemann ★ 1.8k
0
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1
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1.1k
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Comment: C: Extract flanking regions from bam files based on coverage threshold
3.8 years ago by mark.ziemann ★ 1.8k
0
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0
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2.0k
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Comment: C: Tactics for analysis of large number of highly similar diseased samples from RNA
updated 3.9 years ago by 40k • written 8.2 years ago by ★ 1.8k
1
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1
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2.8k
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Answer: A: How to discover new mutations in a derived strain relative to a reference genome
updated 3.9 years ago by 40k • written 8.2 years ago by ★ 1.8k
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0
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5.2k
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Answer: A: counting reads with featureCounts - uniquely assign reads to transcripts
updated 3.9 years ago by 40k • written 8.2 years ago by ★ 1.8k
0
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1
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4.6k
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Comment: C: Problems with STAR mapping output
updated 3.9 years ago by 40k • written 8.2 years ago by ★ 1.8k
2
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1
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2.4k
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Answer: Answer: Help simulating RRBS reads
updated 8 months ago by 40k • written 8.3 years ago by ★ 1.8k
1
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0
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14k
views
Answer: A: Extracting specific FASTA sequences from a complex FASTA file
updated 3.9 years ago by 40k • written 8.6 years ago by ★ 1.8k
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0
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1.1k
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Comment: C: Detecting GC Bias in Transcriptomes (RNA-seq)
4.2 years ago by mark.ziemann ★ 1.8k
2
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0
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1.1k
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Comment: C: How to do the WGCNA in R
4.2 years ago by mark.ziemann ★ 1.8k
5
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1
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4.3k
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Answer: A: fgsea tutorial issue with BiocParallel
4.6 years ago by mark.ziemann ★ 1.8k
8
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1
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2.8k
views
Tool: Digital Expression Explorer
RNA-Seq GEO
updated 13 months ago by 40k • written 7.9 years ago by ★ 1.8k
0
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0
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1.2k
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Comment: C: Choosing the best alignment or aligner
4.9 years ago by mark.ziemann ★ 1.8k
1
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0
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1.7k
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Answer: A: Meta-Analysis p-value combining and adjusting
5.0 years ago by mark.ziemann ★ 1.8k
1
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0
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1.8k
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Comment: C: Looking for publicly available dataset.
5.3 years ago by mark.ziemann ★ 1.8k
0
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0
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1.2k
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Comment: C: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
5.6 years ago by mark.ziemann ★ 1.8k
0
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1
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1.2k
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Answer: A: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
5.6 years ago by mark.ziemann ★ 1.8k
0
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1
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2.1k
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Comment: C: WGBS - Methylation state at CpG to peak calls
5.9 years ago by mark.ziemann ★ 1.8k
0
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0
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5.2k
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Comment: C: Cut-off for genesets in GSEA
5.9 years ago by mark.ziemann ★ 1.8k
2
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0
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3.1k
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Answer: A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
5.9 years ago by mark.ziemann ★ 1.8k
2
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1
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3.1k
views
Answer: A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
5.9 years ago by mark.ziemann ★ 1.8k
1
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1
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2.1k
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Comment: C: WGBS - Methylation state at CpG to peak calls
5.9 years ago by mark.ziemann ★ 1.8k
3
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0
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1.8k
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Answer: A: Looking for publicly available dataset.
5.9 years ago by mark.ziemann ★ 1.8k
2
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1
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5.2k
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Comment: C: Cut-off for genesets in GSEA
5.9 years ago by mark.ziemann ★ 1.8k
0
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0
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1.8k
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Comment: C: Download ENCODE Project BED files using REST API
6.2 years ago by mark.ziemann ★ 1.8k
3
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3
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1.8k
views
Download ENCODE Project BED files using REST API
ChIP-Seq python
6.2 years ago by mark.ziemann ★ 1.8k
2
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0
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1.8k
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Answer: A: Download ENCODE Project BED files using REST API
6.2 years ago by mark.ziemann ★ 1.8k
0
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1
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1.5k
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Comment: C: Recommended program for evaluating aligner sensitivity
6.2 years ago by mark.ziemann ★ 1.8k
1
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1
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3.1k
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Answer: A: Bismark Methyl-Seq Analysis
6.2 years ago by mark.ziemann ★ 1.8k
2
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1
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1.5k
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Answer: A: Recommended program for evaluating aligner sensitivity
6.2 years ago by mark.ziemann ★ 1.8k
0
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0
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3.0k
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Answer: A: Total RNA-seq miRNA detection query
6.2 years ago by mark.ziemann ★ 1.8k
0
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0
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1.3k
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Answer: A: CNV tool for small sequences
6.2 years ago by mark.ziemann ★ 1.8k
3
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1
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2.6k
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Answer: A: Why does RNA sequencing data has Thymine as opposed to Uracil? Theoretically, it
6.2 years ago by mark.ziemann ★ 1.8k
0
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0
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1.4k
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Comment: C: Workflow to store and integrate multiple NGS datasets for easy access and analys
6.2 years ago by mark.ziemann ★ 1.8k
0
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0
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2.0k
views
Comment: C: How good are bwa-mem and stampy when dealing with low quality reads?
6.4 years ago by mark.ziemann ★ 1.8k
0
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1
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1.7k
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Comment: C: Chloroplast genome: Need to close 2 gaps (~2Kbp), any suggestions?
6.4 years ago by mark.ziemann ★ 1.8k
0
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0
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1.3k
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Comment: C: Filtering DMRs
6.4 years ago by mark.ziemann ★ 1.8k
199 results • Page 2 of 4
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