User: Pi
Pi • 520
- Reputation:
- 520
- Status:
- New User
- Location:
- Last seen:
- 9 years, 7 months ago
- Joined:
- 9 years, 9 months ago
- Email:
- u1694
Into anything sports related. My proudest achievements are running 2 half marathons after a leg injury which stopped me running for 10 years. I also enjoy pottery and have more fruit bowls than any normal person should have.
0
votes
1
answer
13k
views
1
answers
Comment:
C: Help Understanding Pileup Format
... Thanks Nina for your reply. I didn't generate this data - i was just given it. I only have the pileup files - not the raw data. Is there a way to filter reads with low mapping quality from the pileup at this point or could/should it have been done before the pileup was created. I read the link you g ...
written 9.7 years ago by
Pi • 520
8
votes
1
answer
13k
views
1
answer
... Hello
I have been given some data in pileup format. Whilst it is beyond the scope of my work to go into the details of how the reads/alignments etc are generated I think it would be remiss of me not to try and understand a bit more about what is going on.
I have read the SAM tools manual and expla ...
7
votes
1
answer
2.8k
views
1
answer
... Greetings
Is there a taxonomy that contains details of species and breeds. I have not been able to find one
Thank you for your time
...
0
votes
1
answer
2.9k
views
1
answers
Comment:
C: Indel Notation In Variant Calling
... thanks for your answer. i don't have any alignments to check by eye. just this data. why is the * sometimes before or after the /? If * means one of the genotypes matches the reference, why don't they include the reference allele in the genotype instead. what does it mean when the reference allele i ...
written 9.7 years ago by
Pi • 520
1
vote
5
answers
6.0k
views
5
answers
... Checkout the flanking sequence of these 2 snps. They are not the same hence the 2 different rs entries ...
written 9.7 years ago by
Pi • 520
0
votes
3
answers
3.5k
views
3
answers
Comment:
C: Go Terms In Ensembl
... it would seem this is the missing link i was looking for!! ...
written 9.7 years ago by
Pi • 520
0
votes
3
answers
3.5k
views
3
answers
Comment:
C: Go Terms In Ensembl
... Thanks for your reply. Do you know where this information is stored in the underlying database? I prefer to work with the db directly if possible. ...
written 9.7 years ago by
Pi • 520
0
votes
3
answers
2.6k
views
3
answers
... i've removed the edit as it came out a bit big! ...
written 9.7 years ago by
Pi • 520
0
votes
3
answers
2.6k
views
3
answers
... hi. it was that figure that confused me because the smallest bin in the diagram is 1bp :) If the paper is just saying that once you have found your bin your have to loop through all the features in that bin (rather than the whole genome) then I understand the process. I thought I was missing somethi ...
written 9.7 years ago by
Pi • 520
11
votes
3
answers
3.5k
views
3
answers
... Greetings
When using ensembl, database entries are linked to GO terms at the transcript level. According to the documentation in the Perl api, the GO terms listed are those associated with the Swiss Prot entry for the transcript. These GO terms are then linked directly to the transcript as xrefs vi ...
Latest awards to Pi
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1903 users visited in the last hour