User: lardo

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lardo0
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Posts by lardo

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Comment: C: Build Graph lost k-mers
... No 'N' character in the reads.The lost k-mers can be found in my file but not contained in the graph. ...
written 2.1 years ago by lardo0
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Build Graph lost k-mers
... I have a FASTA file contains unique k-mers with the read length is the k-mer size: >kmer_1 ATGACAGCCTTTTTTAAA >kmer_2 ATGACAGCCTTTTTTAAT Then I used the API of gatb-core-1.0.6-Linux :  Graph::create ((char const *)"-in %s -kmer-size %d -abundance-min 1 -nb-cores %d -out %s", xxxx); There ...
gatb written 2.1 years ago by lardo0 • updated 2.1 years ago by Brian Bushnell10k

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