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Comment: Comment: How does the DNA-seq machine know which strand that is forward/reverse?
5 months ago by scchess ▴ 640
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1
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2.1k
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Comment: C: Filtering large VCFs by allele freqency using bcftools split-vep function
4.3 years ago by scchess ▴ 640
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5.4k
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Comment: C: VariantFiltration warning "undefined variable"
4.7 years ago by scchess ▴ 640
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302k
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Comment: C: How To Filter Mapped Reads With Samtools
4.8 years ago by scchess ▴ 640
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24k
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Comment: C: single line fasta to mult line fasta
5.0 years ago by scchess ▴ 640
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5.3k
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Comment: C: What's the precise definition for sensitivity and specificity for alignment?
updated 5.1 years ago by 44k • written 9.0 years ago by ▴ 640
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1
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7.8k
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Comment: C: How to calculate overall coverage in de novo metagenomics assembly?
updated 5.3 years ago by 44k • written 9.7 years ago by ▴ 640
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1
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7.8k
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Comment: C: How to calculate overall coverage in de novo assembly?
updated 5.3 years ago by 44k • written 9.7 years ago by ▴ 640
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1
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14k
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Comment: C: How to map contigs to the reference genome and know the start and end position?
5.8 years ago by scchess ▴ 640
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11k
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Comment: C: Producing the Reverse-complement of each sequence in fastq files
5.8 years ago by scchess ▴ 640
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1
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213k
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Comment: C: Correct Way To Parse A Fasta File In Python
6.0 years ago by scchess ▴ 640
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1
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12k
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Comment: C: CDS vs cDNA vs transcript for mapping RNA-Seq reads
6.0 years ago by scchess ▴ 640
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15k
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Comment: C: Indel Left/Right Alignment
6.1 years ago by scchess ▴ 640
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25k
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Comment: C: How to order columns of heatmap as they are in matrix data
6.2 years ago by scchess ▴ 640
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12k
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Comment: C: How to get just protein_coding genes using biomart in R
6.2 years ago by scchess ▴ 640
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5.1k
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Comment: C: How to separate htseq-count table to coding RNAs and non-coding RNAs
6.2 years ago by scchess ▴ 640
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5.1k
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Comment: C: How to separate htseq-count table to coding RNAs and non-coding RNAs
6.2 years ago by scchess ▴ 640
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37k
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Comment: C: extract only geneID and gene symbol from GTF file
6.3 years ago by scchess ▴ 640
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5.7k
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Comment: C: PED file format for use with GATK PhaseByTransmission
6.5 years ago by scchess ▴ 640
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4.0k
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Comment: C: gVCF files into Plink!
6.5 years ago by scchess ▴ 640
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4.0k
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Comment: C: split fasta of a protein sequence into consecutive n amino acids
6.6 years ago by scchess ▴ 640
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8.6k
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Comment: C: Finding Kmers From Fasta File
6.6 years ago by scchess ▴ 640
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2
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16k
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Comment: C: fasta file to tab delimited file
6.6 years ago by scchess ▴ 640
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1
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16k
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Comment: C: fasta file to tab delimited file
6.6 years ago by scchess ▴ 640
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12k
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Comment: C: Annotation for SV and CNV
6.6 years ago by scchess ▴ 640
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1
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2.5k
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Comment: C: SOS -- MuTect is picking up obvious germline mutations
6.7 years ago by scchess ▴ 640
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8.3k
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Comment: C: Dbsnp In Vcf
6.7 years ago by scchess ▴ 640
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8.3k
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Comment: C: Dbsnp In Vcf
6.7 years ago by scchess ▴ 640
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6.1k
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Comment: C: Randomly Split A Fastq File
7.4 years ago by scchess ▴ 640
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0
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2.1k
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Comment: C: Bug in RUV spike-in normalization?
7.7 years ago by scchess ▴ 640
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1
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5.5k
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Comment: C: Individual whole genome sequence data download FASTQ
7.8 years ago by scchess ▴ 640
1
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13k
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Comment: C: How to count SNPs, InDels
7.9 years ago by scchess ▴ 640
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0
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9.6k
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Comment: C: Automatic IGV snapshot script
8.0 years ago by scchess ▴ 640
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7.6k
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Comment: C: How to sort VCF "chr1, chr2..."
8.0 years ago by scchess ▴ 640
0
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0
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7.7k
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Comment: C: How To Reorder Bam File Contigs For The Gatk Pipeline
8.0 years ago by scchess ▴ 640
4
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1
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6.4k
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Comment: C: Develop an R package for CRAN vs BioConductor
8.1 years ago by scchess ▴ 640
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3.9k
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Comment: C: Troubleshooting low quality mapping
8.1 years ago by scchess ▴ 640
0
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1
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6.4k
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Comment: C: Develop an R package for CRAN vs BioConductor
8.1 years ago by scchess ▴ 640
0
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0
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6.4k
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Comment: C: Develop an R package for CRAN vs BioConductor
8.1 years ago by scchess ▴ 640
1
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0
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17k
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Comment: C: Retrieve The Reads And Fastq From Bam File
8.2 years ago by scchess ▴ 640
0
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1
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3.4k
views
Comment: C: Bug in JellyFish and DSK k-mer counting tool?
8.2 years ago by scchess ▴ 640
0
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0
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3.4k
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Comment: C: Bug in JellyFish and DSK k-mer counting tool?
8.2 years ago by scchess ▴ 640
2
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1
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38k
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Comment: C: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
8.4 years ago by scchess ▴ 640
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1
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18k
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Comment: C: Gatk - Haplotypecaller Is So Slow, What Is Faster And As Good?
8.5 years ago by scchess ▴ 640
3
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1
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40k
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Comment: C: How To Get Mapping Statistics On Bam File
8.5 years ago by scchess ▴ 640
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2.3k
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Comment: A: what is R shiny application is used for and how to load it in a webpage ?
8.6 years ago by scchess ▴ 640
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1
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3.5k
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Comment: C: How to count number of unique exons/introns (and their locations) in a GTF file?
8.6 years ago by scchess ▴ 640
0
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0
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3.5k
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Comment: C: How to count number of unique exons/introns (and their locations) in a GTF file?
8.6 years ago by scchess ▴ 640
0
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0
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124k
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Comment: C: How To Split A Bam File By Chromosome
8.6 years ago by scchess ▴ 640
1
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0
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24k
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Comment: C: Bed File With Introns Only
8.7 years ago by scchess ▴ 640
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