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questions
8
votes
7
replies
14k
views
6 follow
DESeq2 - "all gene-wise dispersion estimates are within 2 orders of magnitude"
deseq2
RNA-Seq
R
updated 2.2 years ago by
Ram
44k • written 9.6 years ago by
scchess
▴ 640
3
votes
3
replies
5.1k
views
How to convert VarScan TAB format to VCF?
genome
varscan2
updated 5.9 years ago by
marcofraca
▴ 20 • written 8.8 years ago by
scchess
▴ 640
18
votes
9
replies
5.2k
views
Is Sleuth a good package?
RNA-Seq
R
kallisto
sleuth
6.2 years ago by
scchess
▴ 640
2
votes
2
replies
2.1k
views
Bug in RUV spike-in normalization?
RNA-Seq
statistics
biostatistics
updated 7.7 years ago by
debitboro
▴ 270 • written 8.1 years ago by
scchess
▴ 640
3
votes
3
replies
4.0k
views
How to fix my broken GTF file?
gtf
updated 7.8 years ago by
Ryan Dale
5.0k • written 7.8 years ago by
scchess
▴ 640
4
votes
4
replies
2.4k
views
How cuffcompare calculates sensitivity and specificity?
cufflinks
statistics
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
scchess
▴ 640
5
votes
2
replies
3.8k
views
How should I choose? Decoy or not?
genome
updated 21 months ago by
kmzhou4
• 0 • written 7.9 years ago by
scchess
▴ 640
1
vote
3
replies
1.4k
views
Management software for my samples?
rna-seq
sequencing
7.9 years ago by
scchess
▴ 640
13
votes
3
replies
7.6k
views
How to sort VCF "chr1, chr2..."
vcf
updated 8.0 years ago by
Petr Ponomarenko
★ 2.8k • written 8.0 years ago by
scchess
▴ 640
9
votes
6
replies
3.4k
views
Bug in JellyFish and DSK k-mer counting tool?
dsk
jellyfish
k-mer
8.2 years ago by
scchess
▴ 640
3
votes
3
replies
5.2k
views
How to subsample reads for a chromosome in a BAM file with samtools?
samtools
BAM
updated 8.6 years ago by
Devon Ryan
105k • written 8.6 years ago by
scchess
▴ 640
1
vote
5
replies
3.4k
views
How to count number of unique exons/introns (and their locations) in a GTF file?
gtf
exons
8.6 years ago by
scchess
▴ 640
0
votes
4
replies
1.9k
views
Can we do a statistical test of a region against the genome?
dna
genome
8.9 years ago by
scchess
▴ 640
6
votes
6
replies
5.3k
views
What's the precise definition for sensitivity and specificity for alignment?
genome
sequence
bwa
alignment
updated 2.6 years ago by
Ram
44k • written 9.0 years ago by
scchess
▴ 640
8
votes
4
replies
3.2k
views
C++ parse GTF file
gtf
updated 9.1 years ago by
dendrov.kan
▴ 20 • written 9.2 years ago by
scchess
▴ 640
2
votes
3
replies
4.2k
views
Beginner question: box-plot and PCA in RNA-seq
RNA-Seq
updated 2.5 years ago by
Ram
44k • written 9.2 years ago by
scchess
▴ 640
2
votes
1
reply
1.6k
views
Analysis of genomic data - background reading?
dna
genome
biostatistics
updated 2.4 years ago by
Ram
44k • written 9.3 years ago by
scchess
▴ 640
12
votes
10
replies
17k
views
How to generate BedGraph from BedTools Coverage?
genomic
bed
bedtools
updated 2.4 years ago by
Ram
44k • written 9.3 years ago by
scchess
▴ 640
0
votes
1
reply
1.8k
views
How to reuse DESeq2 inputs for EdgeR
deseq2
edgeR
updated 2.3 years ago by
Ram
44k • written 9.7 years ago by
scchess
▴ 640
2
votes
6
replies
7.8k
views
How to calculate overall coverage in de novo metagenomics assembly?
metagenomics
velvet
updated 2.1 years ago by
Ram
44k • written 9.7 years ago by
scchess
▴ 640
3
votes
4
replies
3.4k
views
velvet user manual - node lengths?
velvet
updated 2.1 years ago by
Ram
44k • written 9.7 years ago by
scchess
▴ 640
8
votes
3
replies
6.3k
views
How to run velvet multithreaded?
metagenomics
velveth
updated 2.9 years ago by
Ram
44k • written 9.7 years ago by
scchess
▴ 640
2
votes
2
replies
1.9k
views
Help to interpret SAM read results
tophat
updated 2.0 years ago by
Ram
44k • written 9.7 years ago by
scchess
▴ 640
0
votes
2
replies
3.2k
views
Help: velvetg is trying allocate 2251799813685248 bytes
velvetg
metagenomic
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
scchess
▴ 640
5
votes
5
replies
5.2k
views
How to use my own genome on UCSC browser?
genome
next-gen
browser
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
scchess
▴ 640
25 results • Page
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