Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
answers
0
votes
1
reply
373
views
Answer:
Answer: UMI_extract for paired end reads of micro_RNA
16 days ago by
i.sudbery
18k
1
vote
0
replies
143
views
Answer:
Answer: Detecting presence of UMI from BAM/fastq files without prior knowledge
16 days ago by
i.sudbery
18k
0
votes
1
reply
347
views
Answer:
Answer: conda install -Killed
16 days ago by
i.sudbery
18k
1
vote
0
replies
304
views
Answer:
Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
17 days ago by
i.sudbery
18k
3
votes
1
reply
516
views
Answer:
Answer: Difference between GLM and Wilcoxon rank sum test
24 days ago by
i.sudbery
18k
2
votes
1
reply
229
views
Answer:
Answer: Error from cgat gtf2gtf --method=genes-to-unique-chunks
28 days ago by
i.sudbery
18k
2
votes
1
reply
721
views
Answer:
Answer: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
4 weeks ago by
i.sudbery
18k
1
vote
1
reply
338
views
Answer:
Answer: perplexed regarding the process of gene expression normalision
4 weeks ago by
i.sudbery
18k
1
vote
0
replies
249
views
Answer:
Answer: Heteroscedasticity in RNA-seq data
6 weeks ago by
i.sudbery
18k
2
votes
0
replies
614
views
Answer:
Answer: question on how differential expression is affected if there is differential abu
6 weeks ago by
i.sudbery
18k
2
votes
2
replies
364
views
Answer:
Answer: Enrichment Analysis with Fisher's exact test
6 weeks ago by
i.sudbery
18k
0
votes
0
replies
231
views
Answer:
Answer: Calling variants with UMI-collapsed duplex consensus reads
6 weeks ago by
i.sudbery
18k
2
votes
1
reply
358
views
Answer:
Answer: UMI workflow resulting in bams with empty reads
7 weeks ago by
i.sudbery
18k
3
votes
1
reply
350
views
Answer:
Answer: How to fix DESeq2 Error in checkFullRank(modelMatrix)
7 weeks ago by
i.sudbery
18k
5
votes
1
reply
537
views
Answer:
Answer: Why employ normalization methods, and how can they be utilized in DEG analysis?
8 weeks ago by
i.sudbery
18k
0
votes
0
replies
221
views
Answer:
Answer: Is it possible to identify the strand of an RNA using UMI?
8 weeks ago by
i.sudbery
18k
2
votes
0
replies
705
views
Answer:
Answer: Tower Server configuration for NGS data analysis
8 weeks ago by
i.sudbery
18k
1
vote
0
replies
239
views
Answer:
Answer: Differential Abundance between samples
9 weeks ago by
i.sudbery
18k
0
votes
0
replies
1.6k
views
Answer:
Answer: GOSeq gene ontology enrichment analysis in rice
9 weeks ago by
i.sudbery
18k
0
votes
0
replies
173
views
Answer:
Answer: Batch correction for eQTL analysis
9 weeks ago by
i.sudbery
18k
6
votes
1
reply
892
views
Answer:
Answer: How to overcome the imposter syndrome in bioinformatics?
9 weeks ago by
i.sudbery
18k
2
votes
1
reply
1.2k
views
Answer:
Answer: How to speed Salmon index up
10 weeks ago by
i.sudbery
18k
0
votes
0
replies
581
views
Answer:
Answer: UMI-tools no tsv files at deduplication
10 weeks ago by
i.sudbery
18k
6
votes
1
reply
1.9k
views
Answer:
Answer: Determining computer time required
10 weeks ago by
i.sudbery
18k
1
vote
1
reply
768
views
Answer:
Answer: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
updated 11 weeks ago by
Ram
43k • written 11 weeks ago by
i.sudbery
18k
4
votes
1
reply
471
views
Answer:
Answer: Differential expression analysis in a short gene list
11 weeks ago by
i.sudbery
18k
2
votes
1
reply
467
views
Answer:
Answer: Question about identification of DEGs in paired sample using edgeR
11 weeks ago by
i.sudbery
18k
1
vote
0
replies
545
views
Answer:
Answer: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
updated 12 weeks ago by
Ram
43k • written 12 weeks ago by
i.sudbery
18k
3
votes
1
reply
762
views
Answer:
Answer: installing DESeq2 on Windows
12 weeks ago by
i.sudbery
18k
1
vote
1
reply
1.5k
views
Answer:
Answer: What apps can read large FASTQ files on Windows?
3 months ago by
i.sudbery
18k
1
vote
1
reply
507
views
Answer:
Answer: Best method for batch correction of three datasets
updated 3 months ago by
ATpoint
81k • written 3 months ago by
i.sudbery
18k
0
votes
0
replies
301
views
Answer:
Answer: multiple condition and time course in RNA-seq
4 months ago by
i.sudbery
18k
2
votes
0
replies
560
views
Answer:
Answer: Does DESeq2 correct for library size when importing the counts with DESeqDataSet
4 months ago by
i.sudbery
18k
3
votes
1
reply
1.1k
views
Answer:
Answer: Is my data too noisy for DESeq? Should I model noise as unwanted variation?
4 months ago by
i.sudbery
18k
0
votes
4
replies
1.2k
views
Answer:
Answer: Dealing with transcriptome sequences that are smaller than their respective gene
6 months ago by
i.sudbery
18k
3
votes
1
reply
1.6k
views
Answer:
Answer: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
6 months ago by
i.sudbery
18k
1
vote
1
reply
705
views
Answer:
Answer: From where can I obtain vcf files of healthy exomes
6 months ago by
i.sudbery
18k
1
vote
0
replies
1.4k
views
Answer:
Answer: Is Bioinformatics a Professional Degree?
7 months ago by
i.sudbery
18k
4
votes
1
reply
1.1k
views
Answer:
Answer: Can one sample t.test be used to determine statistical significance for log2FC v
7 months ago by
i.sudbery
18k
0
votes
1
reply
890
views
Answer:
Answer: Understaning the result of Meta-analysis of differential expression across datas
7 months ago by
i.sudbery
18k
2
votes
2
replies
846
views
Answer:
Answer: RSEM uses different gene lengths for each sample.
7 months ago by
i.sudbery
18k
0
votes
1
reply
671
views
Answer:
Answer: Quantification of allele-specific gene expression in RNA-seq
8 months ago by
i.sudbery
18k
0
votes
1
reply
867
views
Answer:
Answer: Umi dedup with fastp
8 months ago by
i.sudbery
18k
2
votes
0
replies
1.8k
views
Answer:
Answer: Don't choose Novogene for your sequencing projects
8 months ago by
i.sudbery
18k
1
vote
1
reply
1.1k
views
Answer:
Answer: losing many genes while doing DGE on the RNAseq data due to read count threshold
8 months ago by
i.sudbery
18k
2
votes
1
reply
1.2k
views
Answer:
Answer: How to allocate memory and CPU without SLURM in a linux cluster?
8 months ago by
i.sudbery
18k
0
votes
1
reply
723
views
Answer:
Answer: correlation plot, FDR value
8 months ago by
i.sudbery
18k
3
votes
1
reply
879
views
Answer:
Answer: How reproducible is transcript quantification through salmon?
8 months ago by
i.sudbery
18k
0
votes
1
reply
1.1k
views
Answer:
Answer: Is it possible to use salmon alevin tool for total rna seq samples?
9 months ago by
i.sudbery
18k
0
votes
0
replies
444
views
Answer:
Answer: Making use of relative density of genomic features between gene sets
9 months ago by
i.sudbery
18k
558 results • Page
1 of 12
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6