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questions
1
vote
9
replies
874
views
Command line or python RNA-seq read simulator
simulation
RNA-seq
5 months ago by
i.sudbery
19k
0
votes
0
replies
385
views
Power calculations for differential ChIP
statistics
power
Chipseq
15 months ago by
i.sudbery
19k
10
votes
4
replies
2.8k
views
Which conservation score to use to measure conservation of splice sites?
compartive-genomics
conservation
updated 16 months ago by
Ram
43k • written 4.9 years ago by
i.sudbery
19k
4
votes
3
replies
1.4k
views
Best practices in eQTL analysis
RNA-Seq
eQTL
updated 3.7 years ago by
rodd
▴ 230 • written 3.7 years ago by
i.sudbery
19k
0
votes
2
replies
903
views
Genotyping samples at a predetermined list of locations
SNP
GATK
Variants
Genotyping
updated 3.7 years ago by
bari.ballew
▴ 460 • written 3.7 years ago by
i.sudbery
19k
5
votes
2
replies
1.4k
views
Genotype PCA from genotype matrix
PCA
SNP
Genotype
3.7 years ago by
i.sudbery
19k
5
votes
6
replies
1.5k
views
RNAseq sample never as A in last base
RNA-Seq
fastqc
updated 3.7 years ago by
adi.rotem
▴ 20 • written 5.1 years ago by
i.sudbery
19k
2
votes
2
replies
1.0k
views
Batch correct batch 2 while leaving batch 1 unchanged.
limma
machine-learning
batch-effect
updated 6 days ago by
Ram
43k • written 3.8 years ago by
i.sudbery
19k
1
vote
0
replies
628
views
Selection of start codons in Ensembl
Ensembl
Annotation
Gene models
3.8 years ago by
i.sudbery
19k
1
vote
1
reply
748
views
uORF annotation in Ensembl/GENCODE
Annotation
Ensembl
Gencode
uORF
updated 3.9 years ago by
JC
13k • written 3.9 years ago by
i.sudbery
19k
0
votes
2
replies
618
views
Deposition of small sets of human fastqs
ethics
data submission
3.9 years ago by
i.sudbery
19k
0
votes
6
replies
1.0k
views
Homology of 3' UTRs
UTR
homology
updated 4.0 years ago by
ATpoint
82k • written 4.0 years ago by
i.sudbery
19k
2
votes
1
reply
2.1k
views
Rename Tag in BAM file
bam
updated 4.4 years ago by
Pierre Lindenbaum
161k • written 4.4 years ago by
i.sudbery
19k
6
votes
7
replies
3.3k
views
How to tell if a BigWig file is 1-based or 0-based?
bigwig
coordinate systems
updated 4.8 years ago by
Alex Reynolds
35k • written 4.9 years ago by
i.sudbery
19k
0
votes
4
replies
1.9k
views
BWA: Read flagged as unmapped, but mate says mate is mapped.
BWA
updated 5.6 years ago by
thomaskuilman
▴ 850 • written 5.6 years ago by
i.sudbery
19k
1
vote
5
replies
1.5k
views
Normalisation of arrays with global changes expected
microarray
normalisation
limma
updated 7.2 years ago by
patrick.bradley
▴ 30 • written 7.2 years ago by
i.sudbery
19k
1
vote
2
replies
2.1k
views
Remote blast from biopython
biopython
blast
updated 7.3 years ago by
Biostar
20 • written 7.4 years ago by
i.sudbery
19k
2
votes
5
replies
6.4k
views
StringTie: To use a reference gene-set or not?
RNA-Seq
stringtie
updated 7.6 years ago by
Biostar
20 • written 7.7 years ago by
i.sudbery
19k
2
votes
1
reply
2.1k
views
List of replication dependent and independent histone genes
histones
annotation
updated 15 months ago by
Ram
43k • written 8.9 years ago by
i.sudbery
19k
19 results • Page
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