Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
7
votes
0
replies
21k
views
Comment: C: VCF to FASTA
9.5 years ago by Matt Shirley 10k
1
vote
0
replies
5.0k
views
Comment: C: Has anybody used TEToolkit successfully to quantify transposable elements?
9.5 years ago by Matt Shirley 10k
0
votes
0
replies
3.1k
views
Comment: C: Python script to trim 3' A nucleotides running slow
9.5 years ago by Matt Shirley 10k
1
vote
0
replies
26k
views
Comment: C: BioPython: convert fasta to fastq without quality score input file
9.5 years ago by Matt Shirley 10k
0
votes
1
reply
7.5k
views
Answer: C: Making bed files from fasta
9.5 years ago by Matt Shirley 10k
1
vote
0
replies
17k
views
Comment: C: How accurate is the IBD calculation by plink?
9.6 years ago by Matt Shirley 10k
0
votes
0
replies
17k
views
Comment: C: How accurate is the IBD calculation by plink?
9.6 years ago by Matt Shirley 10k
1
vote
1
reply
17k
views
Answer: A: How accurate is the IBD calculation by plink?
9.6 years ago by Matt Shirley 10k
0
votes
0
replies
17k
views
Comment: C: How accurate is the IBD calculation by plink?
9.6 years ago by Matt Shirley 10k
3
votes
1
reply
4.2k
views
Comment: C: Locating a sequence in multiple fasta files
9.6 years ago by Matt Shirley 10k
1
vote
0
replies
2.9k
views
Comment: C: Converting CpG methylation calls to average genome coverage
9.6 years ago by Matt Shirley 10k
0
votes
0
replies
3.9k
views
Answer: A: Custom exome array chip with 527 SNPs have chromosome information with 0
9.6 years ago by Matt Shirley 10k
2
votes
0
replies
4.2k
views
Comment: C: Locating a sequence in multiple fasta files
9.6 years ago by Matt Shirley 10k
3
votes
1
reply
4.2k
views
Answer: A: Locating a sequence in multiple fasta files
9.6 years ago by Matt Shirley 10k
1
vote
1
reply
23k
views
Comment: C: pybam - 100% python BAM reader
9.6 years ago by Matt Shirley 10k
0
votes
0
replies
11k
views
Comment: C: randomly shuffle BAM file
9.6 years ago by Matt Shirley 10k
0
votes
0
replies
7.5k
views
Answer: A: Pysam (python) problem parsing BAM reference id
9.6 years ago by Matt Shirley 10k
0
votes
0
replies
2.1k
views
Comment: C: connsensus file too big to read
9.6 years ago by Matt Shirley 10k
0
votes
1
reply
2.1k
views
Comment: C: connsensus file too big to read
9.6 years ago by Matt Shirley 10k
0
votes
0
replies
4.2k
views
Comment: C: pull out flanking sequences of snp
9.6 years ago by Matt Shirley 10k
0
votes
0
replies
4.2k
views
Answer: A: pull out flanking sequences of snp
9.6 years ago by Matt Shirley 10k
0
votes
1
reply
2.3k
views
Comment: C: Variant Calling Workflow by Python?
9.6 years ago by Matt Shirley 10k
2
votes
1
reply
10k
views
Comment: C: cannot allocate vector of size 64.1 Mb
9.6 years ago by Matt Shirley 10k
2
votes
1
reply
10k
views
Answer: C: cannot allocate vector of size 64.1 Mb
9.6 years ago by Matt Shirley 10k
0
votes
0
replies
4.9k
views
Comment: C: Problem using PicardTools MarkDuplicates: Value Was Put Into Pairinfomap More Th
9.6 years ago by Matt Shirley 10k
2
votes
1
reply
4.9k
views
Answer: A: Problem using PicardTools MarkDuplicates: Value Was Put Into Pairinfomap More Th
9.6 years ago by Matt Shirley 10k
0
votes
0
replies
6.6k
views
Comment: C: Extract sequence from multifasta file using samtools
9.6 years ago by Matt Shirley 10k
0
votes
0
replies
8.6k
views
Answer: A: removing fasta sequences that have Ns in it in a fasta file
9.6 years ago by Matt Shirley 10k
0
votes
0
replies
17k
views
Comment: C: Extract Fasta Sequences Sub Sets
9.7 years ago by Matt Shirley 10k
0
votes
0
replies
10k
views
Comment: C: Error Cutadapt: FASTQ file is expected to start with '@
9.7 years ago by Matt Shirley 10k
2
votes
0
replies
7.6k
views
Answer: A: Can You Make A Bam File Picard Compatible? I Forgot -M With Bwa Mem
9.7 years ago by Matt Shirley 10k
1
vote
0
replies
6.9k
views
Comment: C: Why is normal blood used for matched tumor (instead of adjacent norm tissue)?
9.7 years ago by Matt Shirley 10k
1
vote
0
replies
7.0k
views
Comment: C: SAM line does not contain at least 11 tab-delimited fields
9.7 years ago by Matt Shirley 10k
0
votes
1
reply
4.6k
views
Answer: A: Run python scripts (classes and methods) in "R"
9.7 years ago by Matt Shirley 10k
0
votes
0
replies
7.7k
views
Comment: Comment: Meta: Markdown in Biostars (now enabled)
updated 3.3 years ago by 45k • written 9.7 years ago by 10k
0
votes
0
replies
210k
views
Comment: C: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
9.7 years ago by Matt Shirley 10k
1
vote
1
reply
210k
views
Comment: C: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
9.7 years ago by Matt Shirley 10k
0
votes
0
replies
2.9k
views
Comment: C: Importing big sequences into Python
9.7 years ago by Matt Shirley 10k
0
votes
1
reply
143k
views
Comment: C: Convert A Text File Into A Fasta File
9.7 years ago by Matt Shirley 10k
1
vote
1
reply
5.4k
views
Answer: A: Sort Sequences In A Fasta File According To The peg List
9.7 years ago by Matt Shirley 10k
2
votes
0
replies
4.0k
views
Answer: Answer: subset fasta file sequences with id's file
updated 3.3 years ago by 45k • written 9.8 years ago by 10k
0
votes
1
reply
2.8k
views
Answer: Answer: Beta values to copy number variation (CNV)
updated 3.7 years ago by 45k • written 9.8 years ago by 10k
0
votes
1
reply
3.9k
views
Comment: C: How to find the longest common sequence for a cluster of sequences in a fasta fi
9.8 years ago by Matt Shirley 10k
0
votes
1
reply
5.4k
views
Comment: C: Finding most frequent k-mers in Fastq file
9.8 years ago by Matt Shirley 10k
0
votes
1
reply
3.8k
views
Answer: A: Failed FastQC Per sequence GC content of MeDIP Input sample
9.8 years ago by Matt Shirley 10k
1
vote
0
replies
4.1k
views
Comment: C: get dna sequence from chromosome, start, and end
9.8 years ago by Matt Shirley 10k
0
votes
0
replies
10k
views
Answer: A: Trimmomatic adapter fasta file preparation
9.8 years ago by Matt Shirley 10k
1
vote
0
replies
2.5k
views
Comment: C: Regarding fasta file format
9.9 years ago by Matt Shirley 10k
1
vote
1
reply
4.5k
views
Answer: A: Biopython: renaming SeqRecords using dictionary values
9.9 years ago by Matt Shirley 10k
1
vote
1
reply
3.5k
views
Comment: C: Is it possible to include BBMap in Bcbio-nextgen pipeline?
9.9 years ago by Matt Shirley 10k
696 results • Page 5 of 14
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6