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1
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11k
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Comment: C: how to quickly extract sequence from genome positions
9.9 years ago by Matt Shirley 10k
1
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4.5k
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Comment: C: Has anyone tried the new LFQC compression scheme for FASTQ?
9.9 years ago by Matt Shirley 10k
1
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4.5k
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Comment: C: Has anyone tried the new LFQC compression scheme for FASTQ?
9.9 years ago by Matt Shirley 10k
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0
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5.4k
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Comment: C: Generate hg19.fa file from hg19.bt2 index files - bowtie2-inspect???
9.9 years ago by Matt Shirley 10k
3
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2.2k
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Comment: C: Access Your DNA Sequences and Projects Anywhere
9.9 years ago by Matt Shirley 10k
0
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0
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4.4k
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Comment: C: getting error i don't understand using biopython for retrieving sequences from f
10.0 years ago by Matt Shirley 10k
3
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2
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17k
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Answer: A: BWA mem how to know if a read is mapped uniquely?
10.0 years ago by Matt Shirley 10k
1
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0
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7.0k
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Comment: C: How to get fasta sequences based on bt2 index?
10.0 years ago by Matt Shirley 10k
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0
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3.4k
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Comment: C: Help for changing fasta seq ID
10.0 years ago by Matt Shirley 10k
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4.9k
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Answer: Answer: Extract subset sequences from fasta file
updated 3.0 years ago by 45k • written 10.1 years ago by 10k
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0
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27k
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Comment: C: How To Use Coordinates In Order To Extract Sequences In Fasta File?
10.1 years ago by Matt Shirley 10k
0
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0
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8.0k
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Comment: Comment: A faidx-indexed FASTA format file or a FASTA format file
updated 3.2 years ago by 45k • written 10.2 years ago by 10k
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12k
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Comment: C: Cutadapt installation issues
10.2 years ago by Matt Shirley 10k
3
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2
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4.4k
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Comment: Comment: Interperting k-mer plot of FastQC, how can I find out where k-mer enrichment com
updated 3.2 years ago by 45k • written 10.2 years ago by 10k
1
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0
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2.6k
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Comment: C: How to normalize RNAseq raw read counts with out control?
10.2 years ago by Matt Shirley 10k
1
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1
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3.7k
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Answer: Answer: log / log.bio - keeping track of command line workflows
updated 3.2 years ago by 45k • written 10.2 years ago by 10k
0
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0
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12k
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Comment: A: Cutadapt installation issues
10.2 years ago by Matt Shirley 10k
0
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0
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12k
views
Comment: Comment: Cutadapt installation issues
updated 3.2 years ago by 45k • written 10.2 years ago by 10k
0
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1
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12k
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Comment: C: Cutadapt installation issues
10.2 years ago by Matt Shirley 10k
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0
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17k
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Answer: A: Extract Fasta Sequences Sub Sets
10.2 years ago by Matt Shirley 10k
2
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0
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3.0k
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Answer: A: FastQC quality control graphics for publication?
10.2 years ago by Matt Shirley 10k
0
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0
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4.3k
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Answer: A: Why is my fastq data on two files if I am supposed to have single end reads?
10.2 years ago by Matt Shirley 10k
7
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0
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17k
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Answer: Answer: How can I find SRA MD5 checksums for FASTQ files?
updated 3.1 years ago by 45k • written 10.2 years ago by 10k
0
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0
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6.4k
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Comment: C: parsing BAM index (quick&dirty samtools view X.bam region)
10.2 years ago by Matt Shirley 10k
1
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1
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3.7k
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Answer: Answer: uploading fastq in galaxy
updated 3.1 years ago by 45k • written 10.2 years ago by 10k
1
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1
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2.9k
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Comment: Comment: unzipping my file in fedora
updated 3.1 years ago by 45k • written 10.2 years ago by 10k
0
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0
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1.6k
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Answer: Answer: extracting segments from .qual file
updated 3.1 years ago by 45k • written 10.2 years ago by 10k
1
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0
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3.5k
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Answer: Answer: How else can one quantify a DNA sequence besides GC-content and length?
updated 3.1 years ago by 45k • written 10.2 years ago by 10k
2
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0
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3.1k
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Answer: A: partial methylation/intermediate methylation
10.2 years ago by Matt Shirley 10k
0
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0
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5.2k
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Comment: Comment: MultiProcessing on SeqIO biopython objects
updated 3.1 years ago by 45k • written 10.3 years ago by 10k
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0
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5.2k
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Comment: Comment: MultiProcessing on SeqIO biopython objects
updated 3.1 years ago by 45k • written 10.3 years ago by 10k
0
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0
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4.3k
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Answer: A: Taking genotypes out of a vcf file
10.3 years ago by Matt Shirley 10k
0
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1
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8.7k
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Answer: Answer: GFFutils very slow at creating database file. Any Idea why..?
updated 3.1 years ago by 45k • written 10.3 years ago by 10k
1
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0
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8.9k
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Comment: Comment: pysam: filtering reads based on flag
updated 3.0 years ago by 45k • written 10.3 years ago by 10k
3
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1
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8.9k
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Answer: Answer: pysam: filtering reads based on flag
updated 3.0 years ago by 45k • written 10.3 years ago by 10k
0
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0
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10k
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Answer: A: FASTA of an arbitrary genome: Is the first base the 5' end?
10.3 years ago by Matt Shirley 10k
1
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0
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1.9k
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Answer: Answer: whole genome alignments accompanying papers - where to deposit them?
updated 3.0 years ago by 45k • written 10.4 years ago by 10k
4
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1
reply
6.6k
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Answer: Answer: Find reference base for a position in a given read from a BAM file
updated 3.0 years ago by 45k • written 10.4 years ago by 10k
1
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0
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11k
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Comment: C: Parsing a SAM file efficiently
10.4 years ago by Matt Shirley 10k
0
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0
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4.4k
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Answer: A: Matching gene id and extracting fasta sequences using shell script
10.4 years ago by Matt Shirley 10k
1
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0
replies
11k
views
Comment: Comment: filter out fasta File by pattern
updated 3.5 years ago by 45k • written 10.4 years ago by 10k
0
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0
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8.9k
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Comment: Comment: Modifying fasta file based on vcf information
updated 2.9 years ago by 45k • written 10.4 years ago by 10k
3
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3
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8.9k
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Answer: Answer: Modifying fasta file based on vcf information
updated 2.9 years ago by 45k • written 10.4 years ago by 10k
1
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0
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15k
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Answer: Answer: How to use Bed file to extract sequence from FASTA file?
updated 2.9 years ago by 45k • written 10.5 years ago by 10k
0
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1
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5.0k
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Comment: C: What would make fasta file indexing stop prematurely?
10.5 years ago by Matt Shirley 10k
0
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1
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5.0k
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Comment: C: What would make fasta file indexing stop prematurely?
10.5 years ago by Matt Shirley 10k
0
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1
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5.0k
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Comment: C: What would make fasta file indexing stop prematurely?
10.5 years ago by Matt Shirley 10k
0
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1
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5.0k
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Comment: C: What would make fasta file indexing stop prematurely?
10.5 years ago by Matt Shirley 10k
1
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1
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5.0k
views
Comment: C: What would make fasta file indexing stop prematurely?
10.5 years ago by Matt Shirley 10k
1
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1
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5.0k
views
Answer: A: What would make fasta file indexing stop prematurely?
10.5 years ago by Matt Shirley 10k
696 results • Page 6 of 14
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