User: Czh3

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Czh3190
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China
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2 years, 4 months ago
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Posts by Czh3

<prev • 26 results • page 1 of 3 • next >
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Answer: A: microRNA high-throughout sequencing analysis
... Deseq and edgeR both can handle this. ...
written 2.3 years ago by Czh3190
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Answer: A: Cycling detection in ATAC-seq data
... You can read this paper ([http://www.nature.com/nature/journal/v534/n7609/full/nature18606.html][1]), the methods are talking about how to call peaks. [1]: http://www.nature.com/nature/journal/v534/n7609/full/nature18606.html ...
written 2.4 years ago by Czh3190 • updated 23 months ago by h.mon25k
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Comment: C: RNA seq data analysis
... read this: http://www.nature.com/nbt/journal/v29/n7/full/nbt.1883.html ...
written 2.6 years ago by Czh3190
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Comment: C: RNA seq data analysis
... read this: http://www.nature.com/nbt/journal/v29/n7/full/nbt.1883.html ...
written 2.6 years ago by Czh3190
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Comment: A: Best way to determine if two groups of sequences are homologs?
... clustal X http://www.clustal.org/clustal2/#Documentation ...
written 2.6 years ago by Czh3190
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Answer: A: RNA seq data analysis
... Here are 2 papers from Nature Protocol may help you tophat + cufflinks: http://www.nature.com/nprot/journal/v7/n3/full/nprot.2012.016.html hisat + stringtie: http://www.nature.com/nprot/journal/v11/n9/full/nprot.2016.095.html ...
written 2.6 years ago by Czh3190
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Answer: A: TUTORIALS about Hi-C data analysis
... [homer][1] [hicup][2] [1]: http://homer.salk.edu/homer/interactions/ [2]: http://www.bioinformatics.babraham.ac.uk/projects/hicup/ ...
written 3.2 years ago by Czh3190
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Answer: A: How to normalise read count per gene
... Try DESeqhttp://bioconductor.org/packages/release/bioc/html/DESeq.html or edgeR https://bioconductor.org/packages/release/bioc/html/edgeR.html ...
written 3.4 years ago by Czh3190
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Answer: A: looking for chip-seq histone marks and rna-seq data
... http://www.ncbi.nlm.nih.gov/geo/ GEO ...
written 3.4 years ago by Czh3190
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Answer: A: Quantification of RNA-Seq bam files (STAR + HTSeq count)
... Can you paste your genome reference sequence (fasta) to us. I guess the chromosome name in your .fasta file are "1 2 3 ...", but in the GTF file are "chr1 chr2 chr3 ..." ...
written 3.4 years ago by Czh3190

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Teacher 3.3 years ago, created an answer with at least 3 up-votes. For A: Qc And Coverage From Paired-End Reads

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