User: A

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A0
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Posts by A

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Comment: C: Extracting four fold degenerate sites from nucleotide alignment
... Many thanks for getting me started with the code. I'll give it a go and will let you know if successful!! ...
written 4.8 years ago by A0
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Extracting four fold degenerate sites from nucleotide alignment
... Hi all and python users, I am looking for a script written in python or a feature in Biopython or guidance for writing a script in python that would extract four fold degenerate sites from a nucleotide alignment file of about 90 nucleotide sequences. The output file should have four fold degenerate ...
alignment written 4.8 years ago by A0 • updated 4.8 years ago by h.mon30k
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Comment: C: Problem with writing edited feature qualifier to a new gbk file in Biopython
... Dear Peter, The script now works wonderfully, thanks to your magic bit of code. Many upvotes to your answer!   ...
written 5.3 years ago by A0
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Comment: C: Problem with writing edited feature qualifier to a new gbk file in Biopython
... Many thanks for such a super quick response, Peter. I am trying to edit the script now as you have suggested. I will provide feedback if it works. Regards, A  ...
written 5.3 years ago by A0
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Problem with writing edited feature qualifier to a new gbk file in Biopython
... Hi (Bio) python experts, I have written a script in (bio)python below which parses through a gbk file, locates feature.qualifier['protein_id'] by matching it to protein_ids which I have given it (as keys in a dictionary) and amends the feature.qualifier['product'] (given as values to corresponding ...
genome gene forum sequence sequencing written 5.3 years ago by A0 • updated 5.3 years ago by Peter5.8k

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