User: JJ Gao

gravatar for JJ Gao
JJ Gao50
Reputation:
50
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Trusted
Location:
United States/New York/MSKCC
Last seen:
2 years, 2 months ago
Joined:
5 years, 10 months ago
Email:
j************@gmail.com

Posts by JJ Gao

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Where Can I Find A Good Database Of The Repeat Regions Of The Human Genome ?
... I was looking for something similar and found Duplicated Genes Database: http://dgd.genouest.org/... in case this is useful for others. ...
written 2.2 years ago by JJ Gao50
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Comment: C: Is BioDAS still active? If not, is there an alternative?
... Sorry I wasn't clear. I meant the BioDas project: www.biodas.org. (I have edited my question to make it clear.) ...
written 2.6 years ago by JJ Gao50
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Is BioDAS still active? If not, is there an alternative?
... Does anyone know the status of the [DAS project](www.biodas.org)? I Googled around and couldn't find many activities around it? We are interested in supporting DAS-type of distributed API and thought DAS would be a perfect fit, but we would like to know if the project is actively maintained. If no ...
das written 2.6 years ago by JJ Gao50 • updated 2.6 years ago by Pierre Lindenbaum133k
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Answer: A: Log Odds Ratio in cBio-Portal Mutual Exclusion Analysis
... The odds ratio are calculated based on the query performed, so it's using the same data as in the Oncoprint tab. Only non-silent mutations are currently supported in cBioPortal. Most of the patients in cBioPortal, especially TCGA, have only one sample. Some studies contains patients with multiple sa ...
written 5.2 years ago by JJ Gao50
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Answer: A: question about CBioprtal
... When querying 2 or more studies, cBioPortal only support mutaiton and CNA. After selecting one cancer study, you would see expression profile if available for the selected study. However, most of the expression z-score profiles are calculated based on a reference population of tumor samples. Normal ...
written 5.2 years ago by JJ Gao50
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Answer: A: Sorting the cbioportal web output of oncoprint based on frequency percentage
... There is some technical issues for downloading large PDF files, please use SVG and convert to PDF using tools such as Adobe Illustrator. There is no functions for sorting genes on cBioPortal. I would suggest to get the percentage first and then copy the results of alteration percentages per gene ...
written 5.9 years ago by JJ Gao50

Latest awards to JJ Gao

Scholar 5.9 years ago, created an answer that has been accepted. For A: Sorting the cbioportal web output of oncoprint based on frequency percentage
Teacher 5.9 years ago, created an answer with at least 3 up-votes. For A: Sorting the cbioportal web output of oncoprint based on frequency percentage

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