User: ghbore

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ghbore0
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Posts by ghbore

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Answer: A: Exome coordinates in Base Coverage Distribution with GATK
... Maybe you will be interested in this (Human Exome Capture Library Coordinates Download). The interval format GATK accepted was introduced here (CommandLineGATK). It's easy to transform different interval formats. ...
written 3.5 years ago by ghbore0
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Comment: C: recognize known isoform from transcript mapping
... Yes! Exactly, to perform transcript detection (assignment to known transcript/isoform accession number) and prediction (novel transcript/isoform), given we already know their alignment/mapping to genome.  Alternatively, if it would be convinient to start from sequence and need no intermediate aligni ...
written 3.6 years ago by ghbore0
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recognize known isoform from transcript mapping
... Dear all, How to manual-free recognize which known transcript/isoform the alignment/mapping is, given the existence of sequencing error and alignment/mapping error?  Further, judge a alignment/mapping is a novel transcript/isoform?   It seems many transcript assembly or detection softwares, like ...
alignment isoform pacbio written 3.6 years ago by ghbore0 • updated 13 months ago by Biostar ♦♦ 20

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