User: egustavsson

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egustavsson10
Reputation:
10
Status:
New User
Location:
Canada
Last seen:
4 years ago
Joined:
4 years, 2 months ago
Email:
e**********@can.ubc.ca

Posts by egustavsson

<prev • 4 results • page 1 of 1 • next >
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Comment: C: Extract variability between coordinates
... Thanks Ashutosh, tabix will do excatly what Im' looking for. ...
written 4.0 years ago by egustavsson10
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Extract variability between coordinates
... Hi all, Could anyone suggest how to extract variability within a range, i.e. candidate regions, from multiple vcf files? I have exome data from a number of samples, as well as SNP array data, and I'm looking for recessive variability from the exome data within generated runs of homozygosity.  Tha ...
vcf exome genotyping array variant written 4.0 years ago by egustavsson10
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Answer: A: Illumina genotyping report to Plink files
... Thanks! I had to create the .lgen by moving some rows from the initial report and then Plink worked fine for creating the .ped   ...
written 4.2 years ago by egustavsson10
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Illumina genotyping report to Plink files
... I just received my genotyping report files from Illumina, with the locus summary file, and I want to convert the files to Plink files. They came as CSV so I converted them to tab delimited (.txt) and wanted to use gcta to convert into map + ped. However, I get the map file but get an error ("segmen ...
illumina snp plink conversion written 4.2 years ago by egustavsson10 • updated 10 days ago by Biostar ♦♦ 20

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