Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
answers
2
votes
0
replies
2.0k
views
Answer:
A: IsoSeq full length de novo assembly using trinity
4.4 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
5
votes
2
replies
3.4k
views
Answer:
A: What is the difference between deferentially expressed genes and deferentially
4.4 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
1.2k
views
Answer:
A: Queries regarding RNASeq sequencing
4.4 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
3.0k
views
Answer:
A: Finding FASTQ files for TCGA Data
4.4 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
4
votes
0
replies
10k
views
Answer:
A: correlations between principal components and known variables
4.4 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
2
replies
1.3k
views
Answer:
A: CPAT error while analysis
4.4 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
2.2k
views
Answer:
A: Run ASTALAVISTA for large number of files
4.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
1.6k
views
Answer:
A: how to change gtf to fasta file of cufflink, gffread
4.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
3
votes
0
replies
3.9k
views
Answer:
A: Transcript vs. Gene TPM counts?
4.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
1.6k
views
Answer:
A: STAR: Is it ok to align with an index created from genecode but count features f
4.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
1
reply
2.9k
views
Answer:
A: Stringie output doesn't have any gene names!
4.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
1
reply
1.8k
views
Answer:
A: GSEA for paired RNA-Seq data
4.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
941
views
Answer:
A: how to identify gene expression and genes responsible for virulence
4.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
6.8k
views
Answer:
C: Salmon tximport get TPM
4.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
4
replies
1.9k
views
Answer:
A: Do varying amounts of input RNA for library preperation have an effect on differ
4.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
1.8k
views
Answer:
A: Is there a good way to do a PCA of gene expression including samples from differ
4.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
1
reply
1.0k
views
Answer:
A: Feature selection for differential analysis
4.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
1.4k
views
Answer:
A: Can you choose minimum transcript coverage in salmon
4.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
1.4k
views
Answer:
A: Suggestions for avoiding False Positives while identifying differentially expres
4.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
3
votes
1
reply
4.5k
views
Answer:
A: Why run FeatureCounts after Stringtie? (Galaxy recommends!)
4.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
3.3k
views
Answer:
A: Normalization of allele specific counts in RNA-seq
4.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
1.4k
views
Answer:
A: Any database with RNA-Seq signal files for GTEx data?
4.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
3.4k
views
Answer:
A: RPKM and TPM calculation
updated 4.6 years ago by
ATpoint
81k • written 4.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
4
votes
2
replies
1.5k
views
Answer:
A: Can I perform differential gene expression with samples from Poly-A and Ribo-dep
4.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
2.0k
views
Answer:
A: How can I identify cells from Single cell experiment (SCE) using bulk RNA experi
4.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
1
reply
2.0k
views
Answer:
A: How can I identify cells from Single cell experiment (SCE) using bulk RNA experi
4.7 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
1.2k
views
Answer:
A: How to create 2 seurat objects after subsetting data
4.7 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
3
replies
3.6k
views
Answer:
A: Can I compare TPM values for a transcript across different transcriptome assembl
4.7 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
1
reply
1.6k
views
Answer:
A: HISAT2/stringtie: intron impact on expression
4.7 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
2.4k
views
Answer:
A: How to remove cell cycle effct when analysing scRNA-seq data?
4.7 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
1
reply
3.6k
views
Answer:
A: How to quantify gene expression when stringtie considers two adjacent genes as s
4.7 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
1
reply
3.1k
views
Answer:
A: how to caculate effective length for RNA sequencing?
4.7 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
1.1k
views
Answer:
A: filter transcript isoforms with low support
4.7 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
3
votes
1
reply
3.2k
views
Answer:
A: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri
4.7 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
4
votes
1
reply
3.9k
views
Answer:
A: RNAseq: how to make design matrix for limma
4.8 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
6.0k
views
Answer:
A: convert genome file to transcriptome file
4.8 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
0
replies
1.1k
views
Answer:
A: Intron finder for 3' UTR sequences (non-model organism)?
4.8 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
1
reply
1.6k
views
Answer:
A: Running prepare.py on remote server
4.8 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
0
replies
1.4k
views
Answer:
A: denovo transcriptome assembly
4.8 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
2.3k
views
Answer:
A: RNA seq data shows no gene expression but qPCR shows the same gene is upregulate
4.8 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
3.4k
views
Answer:
A: Analysis rMATS of RNA Seq data
4.8 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
1.5k
views
Answer:
A: Can I convert from PSI to RPKM?
4.8 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
3
votes
1
reply
3.9k
views
Answer:
A: trim data with trimmomatic
4.9 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
0
replies
4.5k
views
Answer:
A: Stringtie: use htseq-count or prepDE.py to extract reads?
4.9 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
1.8k
views
Answer:
A: FastQC results interpretation
4.9 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
2
votes
1
reply
1.1k
views
Answer:
A: Can we directly use batch corrected gene expression (Bulk RNA-seq) for further d
4.9 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
963
views
Answer:
A: Robust RNA-seq normalization
5.0 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
1
reply
4.0k
views
Answer:
A: [rMATS] Number of AS Events from one sample
5.0 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
1
vote
0
replies
1.2k
views
Answer:
A: ADVOCATE R package
5.0 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
0
votes
0
replies
4.4k
views
Answer:
A: how to deal with batch effect in TCGA RNA-seq dataset
5.0 years ago by
Kristoffer Vitting-Seerup
★ 4.0k
223 results • Page
2 of 5
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6