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Comment: C: Run ASTALAVISTA for large number of files
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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2.3k
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Comment: C: Run ASTALAVISTA for large number of files
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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1.2k
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Comment: C: How splice-aware aligner (RNA-Seq) deal with long gap (intron) penalty
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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4.7k
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Comment: C: edgeR gives no DE genes <0.05 FDR
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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2.3k
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Comment: C: Run ASTALAVISTA for large number of files
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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3.0k
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Comment: C: Stringie output doesn't have any gene names!
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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1.9k
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Comment: C: GSEA for paired RNA-Seq data
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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3.0k
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Comment: C: Stringie output doesn't have any gene names!
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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964
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Comment: C: how to identify gene expression and genes responsible for virulence
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1.9k
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Comment: C: Do varying amounts of input RNA for library preperation have an effect on differ
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1.8k
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Comment: C: Is there a good way to do a PCA of gene expression including samples from differ
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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3.4k
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Comment: C: Normalization of allele specific counts in RNA-seq
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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965
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Comment: C: transcript assembling problem by cufflinks
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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965
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Comment: C: transcript assembling problem by cufflinks
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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3.4k
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Comment: C: Normalization of allele specific counts in RNA-seq
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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3.4k
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Comment: C: Normalization of allele specific counts in RNA-seq
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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3.4k
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Comment: C: Normalization of allele specific counts in RNA-seq
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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1.5k
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Comment: C: Can I perform differential gene expression with samples from Poly-A and Ribo-dep
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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11k
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Comment: C: How to normalized TPM with TMM method?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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11k
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Comment: C: How to normalized TPM with TMM method?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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3.2k
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Comment: C: how to caculate effective length for RNA sequencing?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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3.2k
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Comment: C: how to caculate effective length for RNA sequencing?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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11k
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Comment: C: How to normalized TPM with TMM method?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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3.4k
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Comment: C: Best way to address different batches of RNA-seq
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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1
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796
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Comment: C: Alternative first exon annotation database
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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1.2k
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Comment: C: Detecting GC Bias in Transcriptomes (RNA-seq)
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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1.7k
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Comment: C: HISAT2/stringtie: intron impact on expression
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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3.2k
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Comment: C: How to create custom gtf annotation file?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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1.6k
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Comment: C: How to import RSEM expected_count data in ucsc to a deseq2 object ?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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8.7k
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Comment: C: How single sample GSEA works
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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1
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8.7k
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Comment: C: How single sample GSEA works
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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1.7k
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Comment: C: HISAT2/stringtie: intron impact on expression
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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3.7k
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Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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8.7k
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Comment: C: How single sample GSEA works
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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945
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Comment: C: How to Align only few transcript and get count?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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3.7k
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Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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3.7k
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Comment: C: Can I compare TPM values for a transcript across different transcriptome assembl
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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1.2k
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Comment: C: Is it possible to use gene count table (.csv) in ballgown package to determine d
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
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0
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1.2k
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Comment: C: Is it possible to use gene count table (.csv) in ballgown package to determine d
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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3.7k
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Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
2
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1
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3.7k
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Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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0
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2.4k
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Comment: C: How to remove cell cycle effct when analysing scRNA-seq data?
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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3.8k
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Comment: C: RNAseq - how to find novel transcripts in under different treatment using string
4.7 years ago by Kristoffer Vitting-Seerup ★ 4.0k
1
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3
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3.8k
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Comment: C: RNAseq - how to find novel transcripts in under different treatment using string
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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932
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Comment: C: extraction significant genes
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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3.8k
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Comment: C: RNAseq - how to find novel transcripts in under different treatment using string
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
reply
3.8k
views
Comment: C: RNAseq - how to find novel transcripts in under different treatment using string
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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1
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15k
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Comment: C: How to do FPKM differential analysis?
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
0
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0
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932
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Comment: C: extraction significant genes
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
3
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2
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15k
views
Comment: A: How to do FPKM differential analysis?
4.8 years ago by Kristoffer Vitting-Seerup ★ 4.0k
258 results • Page 2 of 6
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