User: Gilson

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Gilson 0
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Posts by Gilson

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Comment: C: GMAP v2017-06-20 error
... Did you fix the error? I am experiencing the same issue trying to generate a gff file from trinity contigs: $ gmap -2 -d GENCODE.V27 -t 16 -B 5 -O -f 2 Trinity.fasta > Trinity_9S_FR_gmap.gff Expansion of offsets is now controlled separately by --expand-offsets (default=1). Checking compiler assu ...
written 4 months ago by Gilson 0
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Comment: C: A.Shilatifard's Trrific enhancers
... Madelaine,  Thank you for the reply!  The GEO accession numbers correspond to peak files from individual ChIP-seq experiments but I'm still searching for the bed or fasta files with the genomic location of the enhancers.  I did send an email to Deqing Hu using the stowers extension a couple of wee ...
written 3.3 years ago by Gilson 0
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A.Shilatifard's Trrific enhancers
... Does anyone know the repository site for  the "Trrific enhancers" A. Shilatifard - Mol Cell Biol. 2013 Dec;33(23):4745-54. doi: 10.1128/MCB.01181-13. Epub 2013 Sep 30.    Much appreciated!!  -Sanchez ...
genome sequence written 3.3 years ago by Gilson 0 • updated 3.3 years ago by Madelaine Gogol5.0k

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