User: rice.researcher
rice.researcher • 60
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- Korea, Republic Of
- Last seen:
- 7 hours ago
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Posts by rice.researcher
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... Even without clustering, you can generate such image. For ex, in the left panel of MeV, go to Cluster manager->Gene clusters. Then you can find a drop down box (at left top) and select expression graph option. ...
written 13 days ago by
rice.researcher • 60
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... You can use free software MultiExperiment Viewer (MeV) for generating the plot mentioned in the article. Documentation is available [Here][1]
[1]: https://www.decodon.com/files/doc/MeV_Manual_4_0.pdf ...
written 13 days ago by
rice.researcher • 60
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... Thanks for the direction@theobroma22 ...
written 6 months ago by
rice.researcher • 60
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273
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... Processor failing could result in such fragmentation?Any previous experience? BTW I noticed that using similar commands with this annotation file gave me unfragmented FPKM previously, means its not a problem with annotation file @theobromma22 ...
written 6 months ago by
rice.researcher • 60
1
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1
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... I followed similar steps mentioned in the procedure part of [Trapnell et al, 2012][1] for an RNASeq analysis of oryza sativa datasets. The problem I face is in the Cuffdiff output, where more that one FPKM value is reported for many genes as below,
test_id gene_id gene locus sample_1 ...
written 6 months ago by
rice.researcher • 60
• updated
6 months ago by
theobroma22 • 930
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427
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... I have a micro-array anatomical tissue based co-expressed list of around 80 genes. For each of this gene, I found out the QTL terms associated with it from a genome wide QTL mapped to gene in the organism. For every gene, there are multiple QTL term similar to GO assignment. I would like to know wh ...
written 18 months ago by
rice.researcher • 60
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... I thought there might be some tools which provide a scattered plot kind of mapping ( I mean many dots) onto chromosome. My list is having 3450 genes. In this case, I am not using connector to link genes@Devon Ryan
...
written 2.5 years ago by
rice.researcher • 60
4
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1.3k
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6 follow
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... Hello....
I have a list of arounfd 5000 rice genes. I would like to display those genes in rice chromosome. I tried with Rcircos, tool is good but it can map upto a few genes. So I am in trouble.!! I know about circos but it is beyond my limit to execute. Do anyone of you have an idea about method/ ...
written 2.5 years ago by
rice.researcher • 60
• updated
7 months ago by
bernatgel • 770
Latest awards to rice.researcher
Scholar
13 days ago,
created an answer that has been accepted.
For A: How to plot Z-scores in R for gene expression data
Teacher
13 days ago,
created an answer with at least 3 up-votes.
For A: How to plot Z-scores in R for gene expression data
Popular Question
16 months ago,
created a question with more than 1,000 views.
For Plotting and Visualizing large number of genes into chromsome
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