User: Abdel

gravatar for Abdel
Abdel150
Reputation:
150
Status:
New User
Location:
Montreal
Last seen:
9 years, 1 month ago
Joined:
9 years, 9 months ago
Email:
d*******@msn.com

Junior Bioinformatician Montreal Heart institute (Pharmacogenomics center)

Posts by Abdel

<prev • 20 results • page 1 of 2 • next >
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Comment: C: Gene Pathway Association File For Kegg
... that is a great resource ! I'm tring to use the Perl API ...i installed the `Webservice::InterMine`, but I get this error when I execute a template script. Any idea? ``` Error Error FW-1 at tornado: Access denied. ``` ...
written 9.2 years ago by Abdel150 • updated 16 months ago by _r_am32k
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Annovar And Gene Isoforms
... Hi all when i give this snp (6 7526000 7526000 C A) to annovar (hg18) it is supposed to give me two isoforms(for DSP gene) in the results but it doesn't ! nonsynonymous SNV DSP:NM_004415:exon23:c.C4578A:p.N1526K any explanation ? ...
annovar snp written 9.3 years ago by Abdel150 • updated 9.3 years ago by Larry_Parnell16k
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Causative Snp Data Set
... Hi All which is the best database choice from where i can extract a data set of causative variants and a data set of benign variants (OMIM ,GWAS). Thanks ...
gwas snp written 9.3 years ago by Abdel150 • updated 9.3 years ago by Larry_Parnell16k
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Phylop Mean Score
... Hi folks I m trying to find a way to get the phyloP score for a given physical position , i tried to query the ucsc sql phyloP46wayPlacental table , but i realized that the score I'm looking after is not present in the table . If anybody have an idea of how to get the mean score , let me know ple ...
ucsc written 9.4 years ago by Abdel150 • updated 6.6 years ago by Biostar ♦♦ 20
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Comment: C: 1000 Genome ,Dbsnp132 ,Hap Map Frequency For A Set Of Variant
... Thanks Jorge that was helpfull ...
written 9.5 years ago by Abdel150
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Comment: C: 1000 Genome ,Dbsnp132 ,Hap Map Frequency For A Set Of Variant
... It seems like a really powerfull tool , i'm interested on the stand alone version , it take a lot of time to prepare all the stuff , but i'll try it...i was wondering if it works with novel variant (no rs) ? ...
written 9.5 years ago by Abdel150
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1000 Genome ,Dbsnp132 ,Hap Map Frequency For A Set Of Variant
... Hi everybody I have a large set of variant , i have to get allele frequency of CEU,YRI and JPT populations from 1000 genome , dbsnp132 and hapmap . I simply don't know where to begin....should I download all 1000 genome ,dbsnp and HAPMAP database ? what files should I download ? there is lot of ...
genome hapmap frequency dbsnp written 9.5 years ago by Abdel150 • updated 7.0 years ago by Biostar ♦♦ 20
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Comment: C: Chromosome Position In The Ucsc Phylop46Way.Placental.Wigfix File
... if i'm not mistaken , the phyloP score for the chr1 10918 is 0.064 it is intuitive , the confusing thing is that when querying ucsc table browser for this position ,i found a different value 0.0400079 (clade :mammal ,Group :comparative genomics ,track :conservation ,table :mammals Cons phyloP46wayP ...
written 9.6 years ago by Abdel150
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Comment: C: Chromosome Position In The Ucsc Phylop46Way.Placental.Wigfix File
... if i'm not mistaken , the phyloP score for the chr1 10918 is 0.064 it is intuitive , the confusing thing is that when querying ucsc table browser for this position ,i found a different value 0.0400079 (clade :mammal ,Group :comparative genomics ,track :conservation ,table :mammals Cons phyloP46wayP ...
written 9.6 years ago by Abdel150
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Chromosome Position In The Ucsc Phylop46Way.Placental.Wigfix File
... Hi everyone I downloaded the chr1.phyloP46way.placental.wigFix file from ucsc , i need it to get a phyloP score for a given position of the chr1 . My problem is that there is no position field in this file , just the scores... 0.056 0.056 0.056 0.064 0.056 0.064 0.056 . . . Did someone ...
wiggle format ucsc written 9.6 years ago by Abdel150 • updated 9.5 years ago by Emma140

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