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1
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6
replies
2.6k
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Salmon and reads order in fastq in quasi-mapping-based mode
Salmon
updated 6.4 years ago by 81k • written 6.4 years ago by ▴ 550
4
votes
1
reply
1.6k
views
Access old version of ensembl via rest API
ensembl
updated 6.4 years ago by 23k • written 6.4 years ago by ▴ 550
0
votes
0
replies
2.2k
views
Comment: C: Jbrowse install via conda, how do you launch it ?
6.4 years ago by ZheFrench ▴ 550
1
vote
2
replies
2.2k
views
Jbrowse install via conda, how do you launch it ?
jbrowse conda
6.4 years ago by ZheFrench ▴ 550
0
votes
0
replies
3.2k
views
Comment: C: How Do you find constitutive exons in Ensembl or UCSC
6.6 years ago by ZheFrench ▴ 550
0
votes
0
replies
3.2k
views
Comment: C: How Do you find constitutive exons in Ensembl or UCSC
6.6 years ago by ZheFrench ▴ 550
7
votes
7
replies
3.2k
views
How Do you find constitutive exons in Ensembl or UCSC
exons constituve ensembl ucsc biomart
updated 6.6 years ago by 161k • written 6.6 years ago by ▴ 550
1
vote
1
reply
2.0k
views
multiqc : sum up several _Log.final.out into one
RNA-Seq
updated 6.6 years ago by ★ 1.4k • written 7.0 years ago by ▴ 550
0
votes
1
reply
3.5k
views
Comment: C: deeptools PCA vs ChIPQC PCA
6.6 years ago by ZheFrench ▴ 550
8
votes
4
replies
3.5k
views
deeptools PCA vs ChIPQC PCA
deeptools ChIPQC Diffbind chipseq
updated 6.6 years ago by 104k • written 6.6 years ago by ▴ 550
0
votes
0
replies
1.7k
views
How to get flanking exon coordinate based on gencode gtf/gff or biomart
biomart gff annotation gtf gencode
6.7 years ago by ZheFrench ▴ 550
2
votes
1
reply
3.7k
views
Common Cutoff in TPM unit to filter out gene considered as low expressed.
RNA-Seq TPM Salmon
updated 7.2 years ago by 104k • written 7.2 years ago by ▴ 550
4
votes
1
reply
15k
views
How do you normalize Transcript per Million TPM to compare between samples ?
RNA-Seq TPM STAR salmon quantification
7.2 years ago by ZheFrench ▴ 550
0
votes
0
replies
19k
views
Comment: C: Trimming TruSeq Universal Adapter (Trimmomatic)
7.3 years ago by ZheFrench ▴ 550
0
votes
0
replies
3.7k
views
SVA + DESEQ2 : Looking for batcheffect in RNA-SEQ
DESEQ2 SVA RNA-Seq Batch
7.4 years ago by ZheFrench ▴ 550
0
votes
0
replies
2.2k
views
Comment: C: UCSC Viewer : Change color of the reads for stranded RNASEQ as IGV "first-of-pa
7.4 years ago by ZheFrench ▴ 550
0
votes
2
replies
2.2k
views
UCSC Viewer : Change color of the reads for stranded RNASEQ as IGV "first-of-pair-strand
UCSC IGV visualisation
7.4 years ago by ZheFrench ▴ 550
0
votes
2
replies
2.9k
views
Comment: C: Do you use anti-sens reads for differential gene expression analysis with Strand
7.4 years ago by ZheFrench ▴ 550
0
votes
2
replies
2.1k
views
Is it correct to merge bigwig with TPM values from rnaSeq from different biological replicates for the same condition ?
RNA-Seq wig bigwg visualisation
updated 7.4 years ago by ★ 1.6k • written 7.4 years ago by ▴ 550
7
votes
4
replies
2.9k
views
Do you use anti-sens reads for differential gene expression analysis with Stranded Paired-End Library ?
RNA-Seq gene expression DE reads count STAR
updated 7.5 years ago by 104k • written 7.5 years ago by ▴ 550
0
votes
0
replies
5.6k
views
Comment: C: Snpsift extractFields : How Fields Annotation ANN[*].XX is working ?
8.3 years ago by ZheFrench ▴ 550
1
vote
2
replies
5.6k
views
Snpsift extractFields : How Fields Annotation ANN[*].XX is working ?
vcf Snpeff annotation
updated 20 months ago by 43k • written 8.3 years ago by ▴ 550
0
votes
1
reply
5.3k
views
Comment: C: Why sequence is unmapped by bwa but position is given in Sam file and also can
9.0 years ago by ZheFrench ▴ 550
5
votes
2
replies
4.4k
views
Samtools tview : what does underlined reads mean ? Secondary or Orphan
samtools
updated 14 months ago by 43k • written 9.0 years ago by ▴ 550
0
votes
0
replies
1.3k
views
How is computed Mean Coverage from Illumina MiseqReporter ?
sequencing
updated 22 months ago by 43k • written 9.0 years ago by ▴ 550
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