User: gizemtatar

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gizemtatar0
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Posts by gizemtatar

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naccess download error
... I tried install the Naccess program in the Macbook computer. But it gives this error : /usr/local/bin/f77: line 254: /usr/local/bin/f2c: No such file or directory. Can you help for this problem? Gizem-iMac:Naccess gizemtatar$ csh install.scr $ naccess installation program $ ...
naccess written 3.5 years ago by gizemtatar0 • updated 14 months ago by RamRS24k
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Comment: C: different sequence length alignment
... I don't understand. ...
written 4.4 years ago by gizemtatar0
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different sequence length alignment
... I'm creating for global alignment in this R code.But this code is working same length amino acid sequence.If I want to  different length sequence,this programme gives Error: subscript out of bounds. Can you help this topic?   #scoring matrix s1string <- strsplit(seq1, "")[[1]] s2string <- ...
sequence alignment written 4.4 years ago by gizemtatar0 • updated 4.2 years ago by Biostar ♦♦ 20
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Comment: C: traceback algorithm global alignment in R code
... I need manual R code. ...
written 4.4 years ago by gizemtatar0
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traceback algorithm global alignment in R code
...   My needleman-wunsch global alignment scoring matrix :                 G C A T  G C U      0 -1 -2 -3 -4 -5 -6 -7 G -1  1  0 -1 -2 -3 -4 -5 A -2  0  0  1  0 -1 -2 -3 T -3 -1 -1  0  2  1  0 -1 T -4 -2 -2 -1  1  1  0 -1 A -5 -3 -3 -1  0  0  0 -1 C -6 -4 -2 -2 -1 -1  1  0 A -7 -5 -3 -1 -2 -2  0  0 I ...
R sequence alignment written 4.4 years ago by gizemtatar0 • updated 5 weeks ago by parkkh11880
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Comment: C: nrow,ncol name,matrix name
... Yes, I know. I create scoring matrix but this matrix Needleman-Wunsch global alignment matrix. And I need this matrix.  ...
written 4.4 years ago by gizemtatar0
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Comment: C: nrow,ncol name,matrix name
... Because my question don't answer.    ı try it but programme give error : Error in dimnames(x) <- dn :    length of 'dimnames' [2] not equal to array extent ...
written 4.4 years ago by gizemtatar0
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(Closed) nrow,ncol name,matrix name
... My input; seq1="GCATGCU" seq2="GATTACA" n=length(s1string) #seq1 m=length(s2string) #seq2 This matrix D <- matrix(0,nrow=m+1, ncol=n+1) seq1 and seq2 length = 7 but I must create matrix 8x8:        [,1]  [,2] [,3] [,4] [,5] [,6] [,7] [,8] [1,]    0   -1   -2   -3   -4   -5   -6   -7 [2,] ...
sequence written 4.4 years ago by gizemtatar0
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Comment: C: nrow,ncol name used amino acid string
... I try it but programme give error: Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent ...
written 4.4 years ago by gizemtatar0 • updated 8 days ago by RamRS24k
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Comment: A: nrow,ncol name used amino acid string
... ``` [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [1,] 0 -1 -2 -3 -4 -5 -6 -7 [2,] -1 1 0 -1 -2 -3 -4 -5 [3,] -2 0 0 1 0 -1 -2 -3 [4,] -3 -1 -1 0 2 1 0 -1 [5,] -4 -2 -2 -1 1 1 0 1 [6,] -5 -3 -3 -1 ...
written 4.4 years ago by gizemtatar0 • updated 25 days ago by RamRS24k

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Popular Question 4.4 years ago, created a question with more than 1,000 views. For Matchprobes binary packages for R 3.1.3

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