User: Peter Becich

gravatar for Peter Becich
Peter Becich70
Reputation:
70
Status:
New User
Location:
UC Merced
Last seen:
3 years, 10 months ago
Joined:
3 years, 11 months ago
Email:
p**********@gmail.com

I work in the Ardell Lab at UC Merced:  http://compbio.ucmerced.edu/ardell/

Posts by Peter Becich

<prev • 8 results • page 1 of 1 • next >
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Comment: C: FAST: FAST Analysis of Sequences Toolbox
... Good point. ...
written 3.9 years ago by Peter Becich70
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Comment: C: FAST: FAST Analysis of Sequences Toolbox
... I've used wrappers between a few languages and have never gotten a definitive answer on the ambiguity of the term "X wrapper."  It probably means X run under some other language Y, not Y running inside of X.  So I got the term "Javascript wrapper" backwards; it should probably be "Perl wrapper." ...
written 3.9 years ago by Peter Becich70
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Comment: C: FAST: FAST Analysis of Sequences Toolbox
... Today some changes to the FAST utilities fasuniq, fascodon, and alnpi were released, as well as changes to the paper, including new comparisons to similar packages. ...
written 3.9 years ago by Peter Becich70
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Comment: C: FAST: FAST Analysis of Sequences Toolbox
... Thanks, I will read up on these. ...
written 3.9 years ago by Peter Becich70
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Comment: C: FAST: FAST Analysis of Sequences Toolbox
... Maybe I misunderstand Charms, but I thought they are meant to demonstrate installable packages, not replace them.  I see the short explanations "Charms are small programs written in a javascript based language" and "It can also perform calls to external programs" and took this to mean that Charms ar ...
written 3.9 years ago by Peter Becich70
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Comment: C: FAST: FAST Analysis of Sequences Toolbox
... Thanks.  I, personally, am not familiar with bputils but will ask the team about it. ...
written 3.9 years ago by Peter Becich70
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Comment: C: FAST: FAST Analysis of Sequences Toolbox
... Making the FAST utilities available as Charms would be super.  Thanks! ...
written 3.9 years ago by Peter Becich70
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Tool: FAST: FAST Analysis of Sequences Toolbox
... FAST (FAST Analysis of Sequences Toolbox), built on BioPerl, provides open source command-line tools to filter, transform, annotate and analyze biological sequence data. Modeled after the GNU (GNU's Not Unix) Textutils such as  grep, cut, and tr, FAST tools such as fasgrep, fascut, and fastr make it ...
ncbi taxonomy multifasta pipeline bioperl tool written 3.9 years ago by Peter Becich70 • updated 3.9 years ago by Kamil1.9k

Latest awards to Peter Becich

Appreciated 3.9 years ago, created a post with more than 5 votes. For FAST: FAST Analysis of Sequences Toolbox
Autobiographer 3.9 years ago, has more than 80 characters in the information field of the user's profile.

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