User: e.rempel

gravatar for e.rempel
e.rempel1000
Reputation:
1,000
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Location:
Germany, Heidelberg
Last seen:
14 hours ago
Joined:
5 years, 10 months ago
Email:
e*******@dkfz-heidelberg.de

Statistician/bioinformatician.

Posts by e.rempel

<prev • 125 results • page 2 of 13 • next >
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Comment: C: ucsc-bedgraphtobigwig installed but not working -bash: bedGraphToBigWig: command
... This is really strange, I tried on my computer conda install -c bioconda ucsc-bedgraphtobigwig and it worked. It was installed in ~/miniconda3/bin and I could execute "bedGraphToBigWig". One thing you could try (sorry, maybe you have checked it already) whether the path to your conda is in the ...
written 12 weeks ago by e.rempel1000
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Comment: C: ucsc-bedgraphtobigwig installed but not working -bash: bedGraphToBigWig: command
... From the top of my head, try ucsc Followed by TAB button. It could be that the installed commands have “ucsc” prefix ...
written 12 weeks ago by e.rempel1000
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Comment: C: SnpSift case control command for multiple samples
... Just a few remarks: - if you use for loop in one line, the syntax should be different and contain semicolons. Otherwise, you could use indentations. - if I am not mistaken, the usual input for caseControl is a vcf file with multiple samples in it (meaning multiple sample columns in the vcf file). ...
written 3 months ago by e.rempel1000
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Comment: C: GOseq gene2cat format errors
... > I tried the reverse, split(df$GO, df$GO) is just a typo, right? You have tried split(df$GO, df$gene_id)? ...
written 3 months ago by e.rempel1000
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Comment: C: How do I add circles to the tips of a phylogenetic tree that have white fill and
... Please, be more elaborate, e.g. provide the code you have tried, the error messages you have obtained, and so on. You would not expect a person to spend more time on the answer than you have spent on writing the question, would you? ...
written 3 months ago by e.rempel1000
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Comment: C: GOplot error - Gene Ontology plot generation errors
... I would assume that something is wrong with the input files (sorry, somehow unspecific :) I would compare your input data with exemplary input files (I hope the creators of this tool provided them). ...
written 3 months ago by e.rempel1000
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Answer: C: Not able to read 10x data
... One thing I have noticed: the name of the file is SRR11194349_S_L001_R1_001.fastq.gz. I rather expect it to be SRR11194349_S**1**_L001_R1_001.fastq.gz. Did the other samples also look like this? Maybe you have to manually add the missing 1 in the file's name. ...
written 3 months ago by e.rempel1000
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Comment: C: Error when plotting on RStudio: Error in RStudioGD() : Shadow graphics device er
... Following suggestion from @makrez try to recreate the temp folder: C:/Users/Usuario/AppData/Local/Temp/RtmpuYmueE ...
written 3 months ago by e.rempel1000
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Comment: C: Not able to read 10x data
... Difficult to tell. Could you show the content of /home/sidrah19220/mouse_a/sraa/sra? ...
written 3 months ago by e.rempel1000
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Comment: C: Problem in understanding False Discovery Rate (FDR)
... Very nice slide, thanks! It implicates that as a scientist you should think about the plausibility of your new hypotheses **before** you obtain new data. But this is difficult, of course... ...
written 3 months ago by e.rempel1000

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Scholar 3 months ago, created an answer that has been accepted. For A: Problem with topGO: GO term enrichment analysis
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How to create a design matrix for Cpg.annotate?
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Scholar 8 months ago, created an answer that has been accepted. For A: Problem with topGO: GO term enrichment analysis
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Scholar 8 months ago, created an answer that has been accepted. For A: Problem with topGO: GO term enrichment analysis
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Scholar 9 months ago, created an answer that has been accepted. For A: Problem with topGO: GO term enrichment analysis
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Pundit 17 months ago, created a comment with more than 10 votes. For C: Pheatmap error: 'gpar' element 'fill' must not be length 0 , what to do about
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