User: Sumit

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Sumit0
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Posts by Sumit

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Extract coordinates of adjacent genes for each provided intergenic regions from
... Thank you for your suggestions... bedtools closest is working for my problem... ...
written 5.2 years ago by Sumit0
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Comment: C: Extract coordinates of adjacent genes for each provided intergenic regions from
... Thank u Alex, it works.... ...
written 5.2 years ago by Sumit0
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Extract coordinates of adjacent genes for each provided intergenic regions from gff file
... I have gff files and files containing intergenic regions for different bacterial genomes. I want to extract the adjacent genes and their co-ordinate which corresponding those intergenic regions for all of these genomes. Are there any scripts or tools are available?   Example: For Bacillus anthrac ...
genome gene sequence written 5.2 years ago by Sumit0 • updated 5.2 years ago by Alex Reynolds31k
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How to read the GenBank (.gbk) file and output the following extracted features in tabular format: Start and Stop position, Strand, protein_id, Locus_tag and product
... I have a genbank file. I want to extract the Start and Stop position, Strand, protein_id, Locus_tag and product of all CDS in tabular format... Using Biopython or Bioperl How can it possible??? ...
gene genome sequence written 5.6 years ago by Sumit0
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Comment: C: How to find out the reverse complement of DNA from each FASTA formated sequence
... I am grateful to you for your help.. Its work.... ...
written 5.7 years ago by Sumit0
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How to find out the reverse complement of DNA from each FASTA formated sequence file in a directory and generate a new reverse complement FASTA formated files for each of the input files?
... I have total 2000+ genome sequence files in a directory. I need reverse complement sequence for each of the files and want to generate FASTA formated reverse complement sequence file for each files in the directory. ...
genome sequence written 5.7 years ago by Sumit0 • updated 5.7 years ago by Biomonika (Noolean)3.1k

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