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1.3k
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Comment:
Comment: Generating Positional List from VCF
7 weeks ago by
Thind amarinder
▴ 340
0
votes
1
reply
363
views
How to use conumee segment mean for gistic input
genomics
gistic
NGS
methylation
conumee
updated 12 days ago by
sativus
▴ 10 • written 14 months ago by
Thind amarinder
▴ 340
0
votes
1
reply
15k
views
Comment:
Comment: TCGA/Broad Institute CNV Files Segment Mean
15 months ago by
Thind amarinder
▴ 340
1
vote
0
replies
1.2k
views
Answer:
Answer: Converting coordinates using LiftOver from GRCh37 to GRCh38
updated 16 months ago by
Pierre Lindenbaum
158k • written 16 months ago by
Thind amarinder
▴ 340
1
vote
0
replies
12k
views
Comment:
Comment: Methylation Analysis Tutorial in R_part1
16 months ago by
Thind amarinder
▴ 340
0
votes
1
reply
12k
views
Comment:
Comment: Methylation Analysis Tutorial in R_part1
16 months ago by
Thind amarinder
▴ 340
1
vote
1
reply
9.5k
views
Answer:
Answer: Detecting copy number alterations based on RNA-seq data
16 months ago by
Thind amarinder
▴ 340
1
vote
0
replies
31k
views
Comment:
Comment: Sjdboverhang Option In Star
17 months ago by
Thind amarinder
▴ 340
0
votes
0
replies
31k
views
Comment:
Comment: Sjdboverhang Option In Star
17 months ago by
Thind amarinder
▴ 340
0
votes
1
reply
31k
views
Comment:
Comment: Sjdboverhang Option In Star
17 months ago by
Thind amarinder
▴ 340
1
vote
0
replies
5.6k
views
Answer:
Answer: How to make a summary plot like below?
18 months ago by
Thind amarinder
▴ 340
0
votes
0
replies
1.3k
views
Comment:
Comment: computing chromothripsis on cancer genomes
19 months ago by
Thind amarinder
▴ 340
0
votes
1
reply
1.0k
views
Comment:
Comment: RNA sequencing
19 months ago by
Thind amarinder
▴ 340
0
votes
1
reply
4.8k
views
Comment:
Comment: which matrix should be used to draw heatmap in RNAseq?
21 months ago by
Thind amarinder
▴ 340
0
votes
0
replies
628
views
Answer:
Answer: Ploidy in WGS samples
21 months ago by
Thind amarinder
▴ 340
0
votes
0
replies
1.8k
views
Answer:
Answer: RNA-Seq analysis and biological replicates.
22 months ago by
Thind amarinder
▴ 340
0
votes
0
replies
519
views
Comment:
Comment: Tools to detect the bacterial sequences from mouse RNA-seq data
22 months ago by
Thind amarinder
▴ 340
0
votes
0
replies
611
views
Comment:
Comment: solution for lncRNA naming issues for annotation and Functional analysis
22 months ago by
Thind amarinder
▴ 340
0
votes
2
replies
611
views
solution for lncRNA naming issues for annotation and Functional analysis
annotations
lncRNA
functional
22 months ago by
Thind amarinder
▴ 340
0
votes
0
replies
563
views
Comment:
Comment: RNA variant calling pipeline
23 months ago by
Thind amarinder
▴ 340
1
vote
1
reply
571
views
Answer:
Answer: How to quantify the viral sequencing reads from RNA-seq data?
22 months ago by
Thind amarinder
▴ 340
0
votes
0
replies
948
views
Comment:
Comment: extract copy number variation from read count file of WES
2.0 years ago by
Thind amarinder
▴ 340
0
votes
1
reply
948
views
Comment:
Comment: extract copy number variation from read count file of WES
2.0 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
3.6k
views
Comment:
Comment: Which Driver-Gene Detecting Software Supports hg38?
2.1 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
570
views
Comment:
Comment: Dataset of different timepoints of a cancers progression in the same patient?
2.3 years ago by
Thind amarinder
▴ 340
1
vote
0
replies
636
views
Blog:
Revisiting bulk RNA-Seq applications
RNASeq
variants
TWAS
Neoantigens
updated 5 months ago by
Ram
41k • written 2.4 years ago by
Thind amarinder
▴ 340
0
votes
1
reply
1.6k
views
Comment:
Comment: Liftover vs Ensembl Crossmap
2.6 years ago by
Thind amarinder
▴ 340
4
votes
3
replies
1.6k
views
Liftover vs Ensembl Crossmap
crossmap
liftover
converter
assembly
ensembl
2.6 years ago by
Thind amarinder
▴ 340
1
vote
0
replies
3.8k
views
Comment:
Comment: Are there any tutorials available for Nanostring data differential expression an
2.6 years ago by
Thind amarinder
▴ 340
1
vote
1
reply
3.8k
views
Answer:
Answer: Are there any tutorials available for Nanostring data differential expression an
2.6 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
592
views
Adjustment of number of mutations of 3'UTR region for UTR length
UTR
SNV
RNA-Seq
genome
sequence
2.8 years ago by
Thind amarinder
▴ 340
2
votes
0
replies
8.7k
views
Answer:
Answer: Inferring genotype based on RNA sequences (RNA-seq variant calling)
updated 2.6 years ago by
Ram
41k • written 3.0 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
4.6k
views
Comment:
C: Best Way To Measure Mirna-Seq Abundance
3.0 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
737
views
interaction prediction of circRNA and miRNA and co -expression network
miRNA
circRNA
coexpression
RNA-Seq
NGS
3.0 years ago by
Thind amarinder
▴ 340
0
votes
1
reply
4.6k
views
Comment:
C: Best Way To Measure Mirna-Seq Abundance
3.0 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
13k
views
Comment:
C: Bioinformatics Journal with no publishing fees?
3.1 years ago by
Thind amarinder
▴ 340
1
vote
0
replies
1.7k
views
Answer:
A: Potential Bacteria Contamination - RNA-Seq
3.1 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
12k
views
Comment:
C: Gene list from bed file
3.1 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
12k
views
Comment:
C: To Get All Genes Within A Genomic Region
3.1 years ago by
Thind amarinder
▴ 340
15
votes
4
replies
4.4k
views
Tutorial:
RNASeq tutorial for gene differential expression analysis
Transcriptomics
bioconductor
RNA-Seq
R
updated 9 months ago by
Ram
41k • written 3.4 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
4.4k
views
Comment:
C: RNASeq tutorial for gene differential expression analysis
3.2 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
789
views
Pipeline which take care of tumor-normal contamination to correlate VAF, CNA and mRNA expression (WGS, RNASeq)
RNA-Seq
whole genome sequencing
SNV
next-gen
CNA
3.2 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
2.0k
views
Comment:
Comment: How to compare gene TPM values of two different conditions obtained from differe
22 months ago by
Thind amarinder
▴ 340
2
votes
2
replies
2.0k
views
How to compare gene TPM values of two different conditions obtained from different experiments (for overview)
RNA-Seq
TPM
normalization
22 months ago by
Thind amarinder
▴ 340
0
votes
2
replies
4.4k
views
Comment:
C: RNASeq tutorial for gene differential expression analysis
3.2 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
50k
views
Comment:
C: PCA plot from read count matrix from RNA-Seq
3.3 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
3.6k
views
Answer:
A: PHYLIP to MEGA converter
3.3 years ago by
Thind amarinder
▴ 340
0
votes
0
replies
3.9k
views
Answer:
A: error in file conversion with mega software
3.3 years ago by
Thind amarinder
▴ 340
1
vote
0
replies
1.0k
views
Comment:
C: Meta Analysis on RNA-seq data
3.4 years ago by
Thind amarinder
▴ 340
0
votes
1
reply
899
views
Comment:
C: ceRNA network identification
3.4 years ago by
Thind amarinder
▴ 340
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