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How to use conumee segment mean for gistic input
genomics gistic NGS methylation conumee
6 months ago by Thind amarinder ▴ 300
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13k
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Comment: Comment: TCGA/Broad Institute CNV Files Segment Mean
6 months ago by Thind amarinder ▴ 300
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Answer: Answer: Converting coordinates using LiftOver from GRCh37 to GRCh38
updated 7 months ago by 153k • written 7 months ago by ▴ 300
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9.2k
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Comment: Comment: Methylation Analysis Tutorial in R_part1
7 months ago by Thind amarinder ▴ 300
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1
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9.2k
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Comment: Comment: Methylation Analysis Tutorial in R_part1
7 months ago by Thind amarinder ▴ 300
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1
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8.2k
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Answer: Answer: Detecting copy number alterations based on RNA-seq data
8 months ago by Thind amarinder ▴ 300
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27k
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Comment: Comment: Sjdboverhang Option In Star
9 months ago by Thind amarinder ▴ 300
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27k
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Comment: Comment: Sjdboverhang Option In Star
9 months ago by Thind amarinder ▴ 300
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1
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27k
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Comment: Comment: Sjdboverhang Option In Star
9 months ago by Thind amarinder ▴ 300
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3.5k
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Answer: Answer: How to make a summary plot like below?
10 months ago by Thind amarinder ▴ 300
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1.1k
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Comment: Comment: computing chromothripsis on cancer genomes
10 months ago by Thind amarinder ▴ 300
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1
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802
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Comment: Comment: RNA sequencing
10 months ago by Thind amarinder ▴ 300
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1
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4.0k
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Comment: Comment: which matrix should be used to draw heatmap in RNAseq?
12 months ago by Thind amarinder ▴ 300
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472
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Answer: Answer: Ploidy in WGS samples
12 months ago by Thind amarinder ▴ 300
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1.6k
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Answer: Answer: RNA-Seq analysis and biological replicates.
14 months ago by Thind amarinder ▴ 300
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409
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Comment: Comment: Tools to detect the bacterial sequences from mouse RNA-seq data
14 months ago by Thind amarinder ▴ 300
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490
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Comment: Comment: solution for lncRNA naming issues for annotation and Functional analysis
14 months ago by Thind amarinder ▴ 300
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2
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490
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solution for lncRNA naming issues for annotation and Functional analysis
annotations lncRNA functional
14 months ago by Thind amarinder ▴ 300
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0
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426
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Comment: Comment: RNA variant calling pipeline
14 months ago by Thind amarinder ▴ 300
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1
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434
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Answer: Answer: How to quantify the viral sequencing reads from RNA-seq data?
14 months ago by Thind amarinder ▴ 300
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757
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Comment: Comment: extract copy number variation from read count file of WES
15 months ago by Thind amarinder ▴ 300
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1
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757
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Comment: Comment: extract copy number variation from read count file of WES
15 months ago by Thind amarinder ▴ 300
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2.9k
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Comment: Comment: Which Driver-Gene Detecting Software Supports hg38?
17 months ago by Thind amarinder ▴ 300
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462
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Comment: Comment: Dataset of different timepoints of a cancers progression in the same patient?
19 months ago by Thind amarinder ▴ 300
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480
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Blog: Revisiting bulk RNA-Seq applications
TWAS tools Neoantigens RNASeq variants
7 months ago by Thind amarinder ▴ 300
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1
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1.2k
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Comment: Comment: Liftover vs Ensembl Crossmap
23 months ago by Thind amarinder ▴ 300
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3
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1.2k
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Liftover vs Ensembl Crossmap
crossmap liftover converter assembly ensembl
23 months ago by Thind amarinder ▴ 300
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0
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3.1k
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Comment: Comment: Are there any tutorials available for Nanostring data differential expression an
23 months ago by Thind amarinder ▴ 300
1
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1
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3.1k
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Answer: Answer: Are there any tutorials available for Nanostring data differential expression an
23 months ago by Thind amarinder ▴ 300
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0
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506
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Adjustment of number of mutations of 3'UTR region for UTR length
UTR SNV RNA-Seq genome sequence
2.1 years ago by Thind amarinder ▴ 300
2
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0
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7.8k
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Answer: Answer: Inferring genotype based on RNA sequences (RNA-seq variant calling)
updated 22 months ago by 38k • written 2.3 years ago by ▴ 300
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4.4k
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Comment: C: Best Way To Measure Mirna-Seq Abundance
2.3 years ago by Thind amarinder ▴ 300
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633
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interaction prediction of circRNA and miRNA and co -expression network
miRNA circRNA coexpression RNA-Seq NGS
2.3 years ago by Thind amarinder ▴ 300
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1
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4.4k
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Comment: C: Best Way To Measure Mirna-Seq Abundance
2.3 years ago by Thind amarinder ▴ 300
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0
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12k
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Comment: C: Bioinformatics Journal with no publishing fees?
2.3 years ago by Thind amarinder ▴ 300
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1.3k
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Answer: A: Potential Bacteria Contamination - RNA-Seq
2.4 years ago by Thind amarinder ▴ 300
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11k
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Comment: C: Gene list from bed file
2.4 years ago by Thind amarinder ▴ 300
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11k
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Comment: C: To Get All Genes Within A Genomic Region
2.4 years ago by Thind amarinder ▴ 300
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4
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4.1k
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Tutorial: RNASeq tutorial for gene differential expression analysis
Transcriptomics bioconductor RNA-Seq R
updated 9 days ago by 38k • written 2.6 years ago by ▴ 300
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4.1k
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Comment: C: RNASeq tutorial for gene differential expression analysis
2.5 years ago by Thind amarinder ▴ 300
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0
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663
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Pipeline which take care of tumor-normal contamination to correlate VAF, CNA and mRNA expression (WGS, RNASeq)
RNA-Seq whole genome sequencing SNV next-gen CNA
2.5 years ago by Thind amarinder ▴ 300
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0
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1.5k
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Comment: Comment: How to compare gene TPM values of two different conditions obtained from differe
14 months ago by Thind amarinder ▴ 300
1
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2
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1.5k
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How to compare gene TPM values of two different conditions obtained from different experiments (for overview)
RNA-Seq TPM normalization
14 months ago by Thind amarinder ▴ 300
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2
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4.1k
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Comment: C: RNASeq tutorial for gene differential expression analysis
2.5 years ago by Thind amarinder ▴ 300
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0
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45k
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Comment: C: PCA plot from read count matrix from RNA-Seq
2.6 years ago by Thind amarinder ▴ 300
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3.3k
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Answer: A: PHYLIP to MEGA converter
2.6 years ago by Thind amarinder ▴ 300
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3.5k
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Answer: A: error in file conversion with mega software
2.6 years ago by Thind amarinder ▴ 300
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0
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837
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Comment: C: Meta Analysis on RNA-seq data
2.6 years ago by Thind amarinder ▴ 300
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1
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742
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Comment: C: ceRNA network identification
2.6 years ago by Thind amarinder ▴ 300
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0
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564
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query regarding miRNA-mRNA co-expression analysis
co-expression RNA-Seq transcriptomics R next-gen
2.7 years ago by Thind amarinder ▴ 300
93 results • Page 1 of 2
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