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Comment: Comment: Generating Positional List from VCF
7 weeks ago by Thind amarinder ▴ 340
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1
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363
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How to use conumee segment mean for gistic input
genomics gistic NGS methylation conumee
updated 12 days ago by ▴ 10 • written 14 months ago by ▴ 340
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15k
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Comment: Comment: TCGA/Broad Institute CNV Files Segment Mean
15 months ago by Thind amarinder ▴ 340
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1.2k
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Answer: Answer: Converting coordinates using LiftOver from GRCh37 to GRCh38
updated 16 months ago by 158k • written 16 months ago by ▴ 340
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12k
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Comment: Comment: Methylation Analysis Tutorial in R_part1
16 months ago by Thind amarinder ▴ 340
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1
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12k
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Comment: Comment: Methylation Analysis Tutorial in R_part1
16 months ago by Thind amarinder ▴ 340
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1
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9.5k
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Answer: Answer: Detecting copy number alterations based on RNA-seq data
16 months ago by Thind amarinder ▴ 340
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31k
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Comment: Comment: Sjdboverhang Option In Star
17 months ago by Thind amarinder ▴ 340
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31k
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Comment: Comment: Sjdboverhang Option In Star
17 months ago by Thind amarinder ▴ 340
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1
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31k
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Comment: Comment: Sjdboverhang Option In Star
17 months ago by Thind amarinder ▴ 340
1
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5.6k
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Answer: Answer: How to make a summary plot like below?
18 months ago by Thind amarinder ▴ 340
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1.3k
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Comment: Comment: computing chromothripsis on cancer genomes
19 months ago by Thind amarinder ▴ 340
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1
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1.0k
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Comment: Comment: RNA sequencing
19 months ago by Thind amarinder ▴ 340
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1
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4.8k
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Comment: Comment: which matrix should be used to draw heatmap in RNAseq?
21 months ago by Thind amarinder ▴ 340
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628
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Answer: Answer: Ploidy in WGS samples
21 months ago by Thind amarinder ▴ 340
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1.8k
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Answer: Answer: RNA-Seq analysis and biological replicates.
22 months ago by Thind amarinder ▴ 340
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519
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Comment: Comment: Tools to detect the bacterial sequences from mouse RNA-seq data
22 months ago by Thind amarinder ▴ 340
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611
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Comment: Comment: solution for lncRNA naming issues for annotation and Functional analysis
22 months ago by Thind amarinder ▴ 340
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2
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611
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solution for lncRNA naming issues for annotation and Functional analysis
annotations lncRNA functional
22 months ago by Thind amarinder ▴ 340
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0
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563
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Comment: Comment: RNA variant calling pipeline
23 months ago by Thind amarinder ▴ 340
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1
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571
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Answer: Answer: How to quantify the viral sequencing reads from RNA-seq data?
22 months ago by Thind amarinder ▴ 340
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0
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948
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Comment: Comment: extract copy number variation from read count file of WES
2.0 years ago by Thind amarinder ▴ 340
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1
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948
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Comment: Comment: extract copy number variation from read count file of WES
2.0 years ago by Thind amarinder ▴ 340
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0
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3.6k
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Comment: Comment: Which Driver-Gene Detecting Software Supports hg38?
2.1 years ago by Thind amarinder ▴ 340
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0
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570
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Comment: Comment: Dataset of different timepoints of a cancers progression in the same patient?
2.3 years ago by Thind amarinder ▴ 340
1
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0
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636
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Blog: Revisiting bulk RNA-Seq applications
RNASeq variants TWAS Neoantigens
updated 5 months ago by 41k • written 2.4 years ago by ▴ 340
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1
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1.6k
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Comment: Comment: Liftover vs Ensembl Crossmap
2.6 years ago by Thind amarinder ▴ 340
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3
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1.6k
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Liftover vs Ensembl Crossmap
crossmap liftover converter assembly ensembl
2.6 years ago by Thind amarinder ▴ 340
1
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0
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3.8k
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Comment: Comment: Are there any tutorials available for Nanostring data differential expression an
2.6 years ago by Thind amarinder ▴ 340
1
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1
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3.8k
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Answer: Answer: Are there any tutorials available for Nanostring data differential expression an
2.6 years ago by Thind amarinder ▴ 340
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0
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592
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Adjustment of number of mutations of 3'UTR region for UTR length
UTR SNV RNA-Seq genome sequence
2.8 years ago by Thind amarinder ▴ 340
2
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0
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8.7k
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Answer: Answer: Inferring genotype based on RNA sequences (RNA-seq variant calling)
updated 2.6 years ago by 41k • written 3.0 years ago by ▴ 340
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4.6k
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Comment: C: Best Way To Measure Mirna-Seq Abundance
3.0 years ago by Thind amarinder ▴ 340
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0
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737
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interaction prediction of circRNA and miRNA and co -expression network
miRNA circRNA coexpression RNA-Seq NGS
3.0 years ago by Thind amarinder ▴ 340
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1
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4.6k
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Comment: C: Best Way To Measure Mirna-Seq Abundance
3.0 years ago by Thind amarinder ▴ 340
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13k
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Comment: C: Bioinformatics Journal with no publishing fees?
3.1 years ago by Thind amarinder ▴ 340
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1.7k
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Answer: A: Potential Bacteria Contamination - RNA-Seq
3.1 years ago by Thind amarinder ▴ 340
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12k
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Comment: C: Gene list from bed file
3.1 years ago by Thind amarinder ▴ 340
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0
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12k
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Comment: C: To Get All Genes Within A Genomic Region
3.1 years ago by Thind amarinder ▴ 340
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4
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4.4k
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Tutorial: RNASeq tutorial for gene differential expression analysis
Transcriptomics bioconductor RNA-Seq R
updated 9 months ago by 41k • written 3.4 years ago by ▴ 340
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0
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4.4k
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Comment: C: RNASeq tutorial for gene differential expression analysis
3.2 years ago by Thind amarinder ▴ 340
0
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0
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789
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Pipeline which take care of tumor-normal contamination to correlate VAF, CNA and mRNA expression (WGS, RNASeq)
RNA-Seq whole genome sequencing SNV next-gen CNA
3.2 years ago by Thind amarinder ▴ 340
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0
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2.0k
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Comment: Comment: How to compare gene TPM values of two different conditions obtained from differe
22 months ago by Thind amarinder ▴ 340
2
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2
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2.0k
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How to compare gene TPM values of two different conditions obtained from different experiments (for overview)
RNA-Seq TPM normalization
22 months ago by Thind amarinder ▴ 340
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2
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4.4k
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Comment: C: RNASeq tutorial for gene differential expression analysis
3.2 years ago by Thind amarinder ▴ 340
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50k
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Comment: C: PCA plot from read count matrix from RNA-Seq
3.3 years ago by Thind amarinder ▴ 340
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0
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3.6k
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Answer: A: PHYLIP to MEGA converter
3.3 years ago by Thind amarinder ▴ 340
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0
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3.9k
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Answer: A: error in file conversion with mega software
3.3 years ago by Thind amarinder ▴ 340
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0
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1.0k
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Comment: C: Meta Analysis on RNA-seq data
3.4 years ago by Thind amarinder ▴ 340
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1
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899
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Comment: C: ceRNA network identification
3.4 years ago by Thind amarinder ▴ 340
94 results • Page 1 of 2
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