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145
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How to use conumee segment mean for gistic input
genomics
gistic
NGS
methylation
conumee
6 months ago by
Thind amarinder
▴ 300
0
votes
0
replies
13k
views
Comment:
Comment: TCGA/Broad Institute CNV Files Segment Mean
6 months ago by
Thind amarinder
▴ 300
1
vote
0
replies
569
views
Answer:
Answer: Converting coordinates using LiftOver from GRCh37 to GRCh38
updated 7 months ago by
Pierre Lindenbaum
153k • written 7 months ago by
Thind amarinder
▴ 300
1
vote
0
replies
9.2k
views
Comment:
Comment: Methylation Analysis Tutorial in R_part1
7 months ago by
Thind amarinder
▴ 300
0
votes
1
reply
9.2k
views
Comment:
Comment: Methylation Analysis Tutorial in R_part1
7 months ago by
Thind amarinder
▴ 300
0
votes
1
reply
8.2k
views
Answer:
Answer: Detecting copy number alterations based on RNA-seq data
8 months ago by
Thind amarinder
▴ 300
0
votes
0
replies
27k
views
Comment:
Comment: Sjdboverhang Option In Star
9 months ago by
Thind amarinder
▴ 300
0
votes
0
replies
27k
views
Comment:
Comment: Sjdboverhang Option In Star
9 months ago by
Thind amarinder
▴ 300
0
votes
1
reply
27k
views
Comment:
Comment: Sjdboverhang Option In Star
9 months ago by
Thind amarinder
▴ 300
1
vote
0
replies
3.5k
views
Answer:
Answer: How to make a summary plot like below?
10 months ago by
Thind amarinder
▴ 300
0
votes
0
replies
1.1k
views
Comment:
Comment: computing chromothripsis on cancer genomes
10 months ago by
Thind amarinder
▴ 300
0
votes
1
reply
802
views
Comment:
Comment: RNA sequencing
10 months ago by
Thind amarinder
▴ 300
0
votes
1
reply
4.0k
views
Comment:
Comment: which matrix should be used to draw heatmap in RNAseq?
12 months ago by
Thind amarinder
▴ 300
0
votes
0
replies
472
views
Answer:
Answer: Ploidy in WGS samples
12 months ago by
Thind amarinder
▴ 300
0
votes
0
replies
1.6k
views
Answer:
Answer: RNA-Seq analysis and biological replicates.
14 months ago by
Thind amarinder
▴ 300
0
votes
0
replies
409
views
Comment:
Comment: Tools to detect the bacterial sequences from mouse RNA-seq data
14 months ago by
Thind amarinder
▴ 300
0
votes
0
replies
490
views
Comment:
Comment: solution for lncRNA naming issues for annotation and Functional analysis
14 months ago by
Thind amarinder
▴ 300
0
votes
2
replies
490
views
solution for lncRNA naming issues for annotation and Functional analysis
annotations
lncRNA
functional
14 months ago by
Thind amarinder
▴ 300
0
votes
0
replies
426
views
Comment:
Comment: RNA variant calling pipeline
14 months ago by
Thind amarinder
▴ 300
1
vote
1
reply
434
views
Answer:
Answer: How to quantify the viral sequencing reads from RNA-seq data?
14 months ago by
Thind amarinder
▴ 300
0
votes
0
replies
757
views
Comment:
Comment: extract copy number variation from read count file of WES
15 months ago by
Thind amarinder
▴ 300
0
votes
1
reply
757
views
Comment:
Comment: extract copy number variation from read count file of WES
15 months ago by
Thind amarinder
▴ 300
0
votes
0
replies
2.9k
views
Comment:
Comment: Which Driver-Gene Detecting Software Supports hg38?
17 months ago by
Thind amarinder
▴ 300
0
votes
0
replies
462
views
Comment:
Comment: Dataset of different timepoints of a cancers progression in the same patient?
19 months ago by
Thind amarinder
▴ 300
1
vote
0
replies
480
views
Blog:
Revisiting bulk RNA-Seq applications
TWAS
tools
Neoantigens
RNASeq
variants
7 months ago by
Thind amarinder
▴ 300
0
votes
1
reply
1.2k
views
Comment:
Comment: Liftover vs Ensembl Crossmap
23 months ago by
Thind amarinder
▴ 300
4
votes
3
replies
1.2k
views
Liftover vs Ensembl Crossmap
crossmap
liftover
converter
assembly
ensembl
23 months ago by
Thind amarinder
▴ 300
1
vote
0
replies
3.1k
views
Comment:
Comment: Are there any tutorials available for Nanostring data differential expression an
23 months ago by
Thind amarinder
▴ 300
1
vote
1
reply
3.1k
views
Answer:
Answer: Are there any tutorials available for Nanostring data differential expression an
23 months ago by
Thind amarinder
▴ 300
0
votes
0
replies
506
views
Adjustment of number of mutations of 3'UTR region for UTR length
UTR
SNV
RNA-Seq
genome
sequence
2.1 years ago by
Thind amarinder
▴ 300
2
votes
0
replies
7.8k
views
Answer:
Answer: Inferring genotype based on RNA sequences (RNA-seq variant calling)
updated 22 months ago by
Ram
38k • written 2.3 years ago by
Thind amarinder
▴ 300
0
votes
0
replies
4.4k
views
Comment:
C: Best Way To Measure Mirna-Seq Abundance
2.3 years ago by
Thind amarinder
▴ 300
0
votes
0
replies
633
views
interaction prediction of circRNA and miRNA and co -expression network
miRNA
circRNA
coexpression
RNA-Seq
NGS
2.3 years ago by
Thind amarinder
▴ 300
0
votes
1
reply
4.4k
views
Comment:
C: Best Way To Measure Mirna-Seq Abundance
2.3 years ago by
Thind amarinder
▴ 300
0
votes
0
replies
12k
views
Comment:
C: Bioinformatics Journal with no publishing fees?
2.3 years ago by
Thind amarinder
▴ 300
1
vote
0
replies
1.3k
views
Answer:
A: Potential Bacteria Contamination - RNA-Seq
2.4 years ago by
Thind amarinder
▴ 300
0
votes
0
replies
11k
views
Comment:
C: Gene list from bed file
2.4 years ago by
Thind amarinder
▴ 300
0
votes
0
replies
11k
views
Comment:
C: To Get All Genes Within A Genomic Region
2.4 years ago by
Thind amarinder
▴ 300
15
votes
4
replies
4.1k
views
Tutorial:
RNASeq tutorial for gene differential expression analysis
Transcriptomics
bioconductor
RNA-Seq
R
updated 9 days ago by
Ram
38k • written 2.6 years ago by
Thind amarinder
▴ 300
0
votes
0
replies
4.1k
views
Comment:
C: RNASeq tutorial for gene differential expression analysis
2.5 years ago by
Thind amarinder
▴ 300
0
votes
0
replies
663
views
Pipeline which take care of tumor-normal contamination to correlate VAF, CNA and mRNA expression (WGS, RNASeq)
RNA-Seq
whole genome sequencing
SNV
next-gen
CNA
2.5 years ago by
Thind amarinder
▴ 300
0
votes
0
replies
1.5k
views
Comment:
Comment: How to compare gene TPM values of two different conditions obtained from differe
14 months ago by
Thind amarinder
▴ 300
1
vote
2
replies
1.5k
views
How to compare gene TPM values of two different conditions obtained from different experiments (for overview)
RNA-Seq
TPM
normalization
14 months ago by
Thind amarinder
▴ 300
0
votes
2
replies
4.1k
views
Comment:
C: RNASeq tutorial for gene differential expression analysis
2.5 years ago by
Thind amarinder
▴ 300
0
votes
0
replies
45k
views
Comment:
C: PCA plot from read count matrix from RNA-Seq
2.6 years ago by
Thind amarinder
▴ 300
0
votes
0
replies
3.3k
views
Answer:
A: PHYLIP to MEGA converter
2.6 years ago by
Thind amarinder
▴ 300
0
votes
0
replies
3.5k
views
Answer:
A: error in file conversion with mega software
2.6 years ago by
Thind amarinder
▴ 300
1
vote
0
replies
837
views
Comment:
C: Meta Analysis on RNA-seq data
2.6 years ago by
Thind amarinder
▴ 300
0
votes
1
reply
742
views
Comment:
C: ceRNA network identification
2.6 years ago by
Thind amarinder
▴ 300
0
votes
0
replies
564
views
query regarding miRNA-mRNA co-expression analysis
co-expression
RNA-Seq
transcriptomics
R
next-gen
2.7 years ago by
Thind amarinder
▴ 300
93 results • Page
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