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Comment: C: Meta Analysis on RNA-seq data
3.7 years ago by Thind amarinder ▴ 340
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983
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Comment: C: ceRNA network identification
3.7 years ago by Thind amarinder ▴ 340
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query regarding miRNA-mRNA co-expression analysis
co-expression RNA-Seq transcriptomics R next-gen
3.7 years ago by Thind amarinder ▴ 340
2
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1
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32k
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Answer: A: Biomart Bioconductor - Retrieving All Entrezgenes Of Hsapiens_Gene_Ensembl
updated 3.8 years ago by 87k • written 3.8 years ago by ▴ 340
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958
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Gene copy number Alteration Interpretation
purple CNA WGS Cancer
updated 3.8 years ago by 20 • written 3.9 years ago by ▴ 340
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Comment: C: How to get fastq files for individual replicates?
3.8 years ago by Thind amarinder ▴ 340
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1.4k
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Comment: C: Having trouble running ANNOVAR annotator for the first time please help!
3.8 years ago by Thind amarinder ▴ 340
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4.1k
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Answer: A: How to process raw data (.cel files) from GEO and get annotation of genes
3.8 years ago by Thind amarinder ▴ 340
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1
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1.3k
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Comment: C: How to get fastq files for individual replicates?
3.8 years ago by Thind amarinder ▴ 340
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1
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3.3k
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Comment: Comment: Role of large/small sample size in adjusting p-value
2.4 years ago by Thind amarinder ▴ 340
5
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5
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3.3k
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Role of large/small sample size in adjusting p-value
statistics genomics next-gen SNP software error
2.4 years ago by Thind amarinder ▴ 340
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1.6k
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Comment: C: How many samples are good to find significant targets using GISTIC?
3.8 years ago by Thind amarinder ▴ 340
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705
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Comment: C: How to download a GEO datafile
3.8 years ago by Thind amarinder ▴ 340
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835
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Comment: C: GO enrichment analysis on my own gene list
3.8 years ago by Thind amarinder ▴ 340
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1.0k
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Answer: A: How can I build a ranks matrix on pre calculated fold changes with RankProd?
3.8 years ago by Thind amarinder ▴ 340
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13k
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Comment: C: Mapping Between Affymetrix Features To Genes
3.8 years ago by Thind amarinder ▴ 340
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2.4k
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Comment: Comment: missing probeID in affymetrix using oligo package
updated 14 months ago by 43k • written 3.8 years ago by ▴ 340
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2.3k
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Comment: C: Load CDF files for Affymetrix ST 2.0 microarrays
3.8 years ago by Thind amarinder ▴ 340
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5.9k
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Comment: C: Where To Find 'The Official Cdf File' For The Affymetrix Hugene 2.0St Array
3.8 years ago by Thind amarinder ▴ 340
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1
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4.7k
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Comment: C: Interpreting ASCAT CNV output
3.9 years ago by Thind amarinder ▴ 340
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2.4k
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Answer: A: Use Sequenza output to run GISTIC2
3.9 years ago by Thind amarinder ▴ 340
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3.4k
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Comment: C: How to convert maf file format to oncoPrint matrix (ComplexHeatmap package)?
3.9 years ago by Thind amarinder ▴ 340
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3.6k
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Comment: C: Conversion of Vep.vcf to MAF format?
3.9 years ago by Thind amarinder ▴ 340
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3.6k
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Answer: A: Conversion of Vep.vcf to MAF format?
3.9 years ago by Thind amarinder ▴ 340
1
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6
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3.6k
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Conversion of Vep.vcf to MAF format?
cancer vep maf snp genome
3.9 years ago by Thind amarinder ▴ 340
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1
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3.6k
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Comment: C: Conversion of Vep.vcf to MAF format?
3.9 years ago by Thind amarinder ▴ 340
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1.1k
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Comment: C: How to compare and visualize own data with other cBioportal based studies?
3.9 years ago by Thind amarinder ▴ 340
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1
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1.1k
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Comment: C: How to compare and visualize own data with other cBioportal based studies?
3.9 years ago by Thind amarinder ▴ 340
2
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6
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1.1k
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How to compare and visualize own data with other cBioportal based studies?
cbioportal tcga
updated 3.9 years ago by 141k • written 3.9 years ago by ▴ 340
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1.1k
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Comment: C: How to compare and visualize own data with other cBioportal based studies?
3.9 years ago by Thind amarinder ▴ 340
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1
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3.4k
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Comment: C: vcf2maf VEP annotated VCF conversion
3.9 years ago by Thind amarinder ▴ 340
0
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1
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3.4k
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Comment: C: How to convert maf file format to oncoPrint matrix (ComplexHeatmap package)?
3.9 years ago by Thind amarinder ▴ 340
1
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2.7k
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Comment: A: generate oncoprint from input VCF file
3.9 years ago by Thind amarinder ▴ 340
0
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4.1k
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Comment: C: How To Get Phylogenetic Tree From Nei Genetic Distance
4.0 years ago by Thind amarinder ▴ 340
0
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1
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4.1k
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Comment: C: How To Get Phylogenetic Tree From Nei Genetic Distance
4.0 years ago by Thind amarinder ▴ 340
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0
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1.1k
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Comment: C: Which DE method perform better for small number of genes
4.0 years ago by Thind amarinder ▴ 340
0
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1
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1.1k
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Comment: C: Which DE method perform better for small number of genes
4.0 years ago by Thind amarinder ▴ 340
2
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5
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1.1k
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Which DE method perform better for small number of genes
RNA-Seq deseq2 edgeR noiseq ttest
updated 4.0 years ago by 104k • written 4.0 years ago by ▴ 340
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1.6k
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Comment: C: How to compare coexpression networks from two conditions with different sample s
4.9 years ago by Thind amarinder ▴ 340
0
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1
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1.6k
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Comment: C: How to compare coexpression networks from two conditions with different sample s
4.9 years ago by Thind amarinder ▴ 340
0
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1
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1.6k
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Comment: C: How to compare coexpression networks from two conditions with different sample s
4.9 years ago by Thind amarinder ▴ 340
0
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1
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1.6k
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Comment: C: How to compare coexpression networks from two conditions with different sample s
4.9 years ago by Thind amarinder ▴ 340
3
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10
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1.6k
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How to compare coexpression networks from two conditions with different sample sizes
correlation coexpression rna-seq gene networks
4.9 years ago by Thind amarinder ▴ 340
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3.1k
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Comment: C: Is there a way to adjust correlation based on sample size
4.9 years ago by Thind amarinder ▴ 340
1
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2.9k
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Answer: Answer: the criteria that need to be used as template sequence for homology modeling
updated 21 months ago by 43k • written 8.2 years ago by ▴ 340
0
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1
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2.3k
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Not able to retrieve PDB id from standalone blast against PDB
blast
updated 22 months ago by 43k • written 9.0 years ago by ▴ 340
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