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4.3k
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Answer: A: error in file conversion with mega software
4.3 years ago by Thind amarinder ▴ 340
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Comment: C: Meta Analysis on RNA-seq data
4.4 years ago by Thind amarinder ▴ 340
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1
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1.1k
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Comment: C: ceRNA network identification
4.4 years ago by Thind amarinder ▴ 340
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787
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query regarding miRNA-mRNA co-expression analysis
co-expression RNA-Seq transcriptomics R next-gen
4.4 years ago by Thind amarinder ▴ 340
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1
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33k
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Answer: A: Biomart Bioconductor - Retrieving All Entrezgenes Of Hsapiens_Gene_Ensembl
updated 4.4 years ago by 88k • written 4.4 years ago by ▴ 340
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Gene copy number Alteration Interpretation
purple CNA WGS Cancer
updated 4.4 years ago by 20 • written 4.5 years ago by ▴ 340
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1.5k
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Comment: C: How to get fastq files for individual replicates?
4.4 years ago by Thind amarinder ▴ 340
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1.7k
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Comment: C: Having trouble running ANNOVAR annotator for the first time please help!
4.4 years ago by Thind amarinder ▴ 340
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4.8k
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Answer: A: How to process raw data (.cel files) from GEO and get annotation of genes
4.4 years ago by Thind amarinder ▴ 340
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1
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1.5k
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Comment: C: How to get fastq files for individual replicates?
4.4 years ago by Thind amarinder ▴ 340
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3.8k
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Comment: Comment: Role of large/small sample size in adjusting p-value
3.1 years ago by Thind amarinder ▴ 340
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5
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3.8k
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Role of large/small sample size in adjusting p-value
statistics genomics next-gen SNP software error
3.1 years ago by Thind amarinder ▴ 340
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1
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1.9k
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Comment: C: How many samples are good to find significant targets using GISTIC?
4.4 years ago by Thind amarinder ▴ 340
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839
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Comment: C: How to download a GEO datafile
4.5 years ago by Thind amarinder ▴ 340
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955
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Comment: C: GO enrichment analysis on my own gene list
4.5 years ago by Thind amarinder ▴ 340
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1.1k
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Answer: A: How can I build a ranks matrix on pre calculated fold changes with RankProd?
4.5 years ago by Thind amarinder ▴ 340
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13k
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Comment: C: Mapping Between Affymetrix Features To Genes
4.5 years ago by Thind amarinder ▴ 340
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2.5k
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Comment: Comment: missing probeID in affymetrix using oligo package
updated 22 months ago by 44k • written 4.5 years ago by ▴ 340
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2.4k
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Comment: C: Load CDF files for Affymetrix ST 2.0 microarrays
4.5 years ago by Thind amarinder ▴ 340
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6.2k
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Comment: C: Where To Find 'The Official Cdf File' For The Affymetrix Hugene 2.0St Array
4.5 years ago by Thind amarinder ▴ 340
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1
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5.6k
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Comment: C: Interpreting ASCAT CNV output
4.5 years ago by Thind amarinder ▴ 340
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2.7k
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Answer: A: Use Sequenza output to run GISTIC2
4.5 years ago by Thind amarinder ▴ 340
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4.1k
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Comment: C: How to convert maf file format to oncoPrint matrix (ComplexHeatmap package)?
4.5 years ago by Thind amarinder ▴ 340
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4.2k
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Comment: C: Conversion of Vep.vcf to MAF format?
4.5 years ago by Thind amarinder ▴ 340
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4.2k
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Answer: A: Conversion of Vep.vcf to MAF format?
4.5 years ago by Thind amarinder ▴ 340
1
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6
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4.2k
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Conversion of Vep.vcf to MAF format?
cancer vep maf snp genome
4.5 years ago by Thind amarinder ▴ 340
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1
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4.2k
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Comment: C: Conversion of Vep.vcf to MAF format?
4.5 years ago by Thind amarinder ▴ 340
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0
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1.3k
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Comment: C: How to compare and visualize own data with other cBioportal based studies?
4.6 years ago by Thind amarinder ▴ 340
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1
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1.3k
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Comment: C: How to compare and visualize own data with other cBioportal based studies?
4.6 years ago by Thind amarinder ▴ 340
2
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6
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1.3k
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How to compare and visualize own data with other cBioportal based studies?
cbioportal tcga
updated 4.6 years ago by 148k • written 4.6 years ago by ▴ 340
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1.3k
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Comment: C: How to compare and visualize own data with other cBioportal based studies?
4.6 years ago by Thind amarinder ▴ 340
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1
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3.8k
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Comment: C: vcf2maf VEP annotated VCF conversion
4.6 years ago by Thind amarinder ▴ 340
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1
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4.1k
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Comment: C: How to convert maf file format to oncoPrint matrix (ComplexHeatmap package)?
4.6 years ago by Thind amarinder ▴ 340
1
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0
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2.9k
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Comment: A: generate oncoprint from input VCF file
4.6 years ago by Thind amarinder ▴ 340
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4.3k
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Comment: C: How To Get Phylogenetic Tree From Nei Genetic Distance
4.6 years ago by Thind amarinder ▴ 340
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1
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4.3k
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Comment: C: How To Get Phylogenetic Tree From Nei Genetic Distance
4.6 years ago by Thind amarinder ▴ 340
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0
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1.3k
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Comment: C: Which DE method perform better for small number of genes
4.6 years ago by Thind amarinder ▴ 340
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1
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1.3k
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Comment: C: Which DE method perform better for small number of genes
4.6 years ago by Thind amarinder ▴ 340
2
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5
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1.3k
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Which DE method perform better for small number of genes
RNA-Seq deseq2 edgeR noiseq ttest
updated 4.6 years ago by 104k • written 4.7 years ago by ▴ 340
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1.9k
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Comment: C: How to compare coexpression networks from two conditions with different sample s
5.6 years ago by Thind amarinder ▴ 340
0
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1
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1.9k
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Comment: C: How to compare coexpression networks from two conditions with different sample s
5.6 years ago by Thind amarinder ▴ 340
0
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1
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1.9k
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Comment: C: How to compare coexpression networks from two conditions with different sample s
5.6 years ago by Thind amarinder ▴ 340
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1
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1.9k
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Comment: C: How to compare coexpression networks from two conditions with different sample s
5.6 years ago by Thind amarinder ▴ 340
3
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10
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1.9k
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How to compare coexpression networks from two conditions with different sample sizes
correlation coexpression rna-seq gene networks
5.6 years ago by Thind amarinder ▴ 340
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0
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3.3k
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Comment: C: Is there a way to adjust correlation based on sample size
5.6 years ago by Thind amarinder ▴ 340
1
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0
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3.1k
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Answer: Answer: the criteria that need to be used as template sequence for homology modeling
updated 2.4 years ago by 44k • written 8.8 years ago by ▴ 340
0
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1
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2.4k
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Not able to retrieve PDB id from standalone blast against PDB
blast
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 340
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