User: slimane.khayi

gravatar for slimane.khayi
Reputation:
40
Status:
New User
Location:
France
Last seen:
4 months, 3 weeks ago
Joined:
5 years, 6 months ago
Email:
s************@gmail.com

Posts by slimane.khayi

<prev • 22 results • page 1 of 3 • next >
0
votes
0
answers
144
views
0
answers
How to use sequenced PCR control to remove contaminants reads from samples
... Dear all, I have sequenced PCR controls in my metagenomics experiment. I'm using usearch in my analysis. How can remove these "contaminants reads" from my samples? Thank you for your help. Sincerely. ...
usearch metagenomics denoise control pcr written 7 months ago by slimane.khayi40
0
votes
1
answer
481
views
1
answer
extract annotation for mVISTA whole genome comparison
... Dear all, I need to perform whole genome comparisons within cp genomes and I have to prepare specific annotation files to feed mVISTA server as described below : < 106481 116661 gene1 106481 106497 utr 107983 108069 exon 109884 110033 exon 111865 112023 exon &g ...
genome annotation alignment mvista written 20 months ago by slimane.khayi40 • updated 10 days ago by Michael G50
0
votes
0
answers
1.2k
views
0
answers
Comment: A: kmer content failling with fastqc
... thank you all for your answer. ...
written 2.4 years ago by slimane.khayi40
0
votes
0
answers
1.2k
views
0
answers
Comment: C: kmer content failling with fastqc
... No, how can I proceed ? ...
written 2.4 years ago by slimane.khayi40
0
votes
0
answers
1.2k
views
0
answers
Comment: A: kmer content failling with fastqc
... ...
written 2.4 years ago by slimane.khayi40
3
votes
0
answers
1.2k
views
6 follow
0
answers
kmer content failling with fastqc
... Dear all I have trimmed my data(illumina 2*150PE) using bbduk from bbmap suite and still have this issue with fastqc (see photos) as failling kmer content, do you have any suggestion to deal with this problem befor downstream analysis? thank you very much. ![kmercontent][1] ![enter image description ...
illumina ngs bbduk trimming adaptor trimming written 2.4 years ago by slimane.khayi40
0
votes
4
answers
773
views
4
answers
Answer: A: denovo assembly combining multiple data sets
... Thank you colindaven for your reactivity. ...
written 2.8 years ago by slimane.khayi40
0
votes
2
answers
974
views
2
answers
Answer: A: velvetg failed during the assembly
... thank you for your answer, I'll try it. ...
written 2.8 years ago by slimane.khayi40
2
votes
2
answers
974
views
2
answers
velvetg failed during the assembly
... Dear all, I have problem during my denovo assembly process, I have launched velveth for mypaired.fastq containing 600 millions reads in total (length 150) : velveth out_21 21 -fastq -shortpaired mypaired.fastq for this steps all were ok then I launched velvetg on out_21/: velvetg out_21 -sca ...
illumina n50 velvet denovo written 2.8 years ago by slimane.khayi40
0
votes
4
answers
773
views
4
answers
Answer: A: denovo assembly combining multiple data sets
... thankyou colindaven, I'll try with Soapdenovo. What about if I want to perform a denovo using a reference? thanks. ...
written 2.8 years ago by slimane.khayi40

Latest awards to slimane.khayi

Popular Question 6 months ago, created a question with more than 1,000 views. For structural variations under CLC genomics
Popular Question 20 months ago, created a question with more than 1,000 views. For structural variations under CLC genomics
Popular Question 20 months ago, created a question with more than 1,000 views. For Genome annotation COGs assignements
Popular Question 2.4 years ago, created a question with more than 1,000 views. For bacterial genome annotation for rna seq analysis
Popular Question 3.7 years ago, created a question with more than 1,000 views. For rename reads in fastq files

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1579 users visited in the last hour