User: slimane.khayi

gravatar for slimane.khayi
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Location:
France
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1 month ago
Joined:
3 years, 11 months ago
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Posts by slimane.khayi

<prev • 21 results • page 1 of 3 • next >
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extract annotation for mVISTA whole genome comparison
... Dear all, I need to perform whole genome comparisons within cp genomes and I have to prepare specific annotation files to feed mVISTA server as described below : < 106481 116661 gene1 106481 106497 utr 107983 108069 exon 109884 110033 exon 111865 112023 exon &g ...
genome annotation alignment mvista written 4 weeks ago by slimane.khayi40
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Comment: A: kmer content failling with fastqc
... thank you all for your answer. ...
written 10 months ago by slimane.khayi40
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Comment: C: kmer content failling with fastqc
... No, how can I proceed ? ...
written 10 months ago by slimane.khayi40
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Comment: A: kmer content failling with fastqc
... ...
written 10 months ago by slimane.khayi40
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kmer content failling with fastqc
... Dear all I have trimmed my data(illumina 2*150PE) using bbduk from bbmap suite and still have this issue with fastqc (see photos) as failling kmer content, do you have any suggestion to deal with this problem befor downstream analysis? thank you very much. ![kmercontent][1] ![enter image description ...
illumina ngs bbduk trimming adaptor trimming written 10 months ago by slimane.khayi40
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Answer: A: denovo assembly combining multiple data sets
... Thank you colindaven for your reactivity. ...
written 14 months ago by slimane.khayi40
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Answer: A: velvetg failed during the assembly
... thank you for your answer, I'll try it. ...
written 14 months ago by slimane.khayi40
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velvetg failed during the assembly
... Dear all, I have problem during my denovo assembly process, I have launched velveth for mypaired.fastq containing 600 millions reads in total (length 150) : velveth out_21 21 -fastq -shortpaired mypaired.fastq for this steps all were ok then I launched velvetg on out_21/: velvetg out_21 -sca ...
illumina n50 velvet denovo written 14 months ago by slimane.khayi40
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Answer: A: denovo assembly combining multiple data sets
... thankyou colindaven, I'll try with Soapdenovo. What about if I want to perform a denovo using a reference? thanks. ...
written 14 months ago by slimane.khayi40
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denovo assembly combining multiple data sets
... Dear guys We ave sequenced the whole genome of a plant species (about 700Mb) using two technologies and the data output as bellow: Illumina: PE 2*150, insert size 330-550bp, random sharing total reads : 606 037 434 total bases: 91 511 652 534 (90Gb) IonTorrent : single read, average lenght 125bp ...
illumina paired-end denovo single-end iontorrent written 14 months ago by slimane.khayi40

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Popular Question 9 months ago, created a question with more than 1,000 views. For bacterial genome annotation for rna seq analysis
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