User: orange

gravatar for orange
orange30
Reputation:
30
Status:
New User
Location:
Korea, Republic Of
Last seen:
5 months, 3 weeks ago
Joined:
5 years, 7 months ago
Email:
1*********@qq.com

Posts by orange

<prev • 15 results • page 2 of 2 • next >
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Answer: A: Post Genome Assembly
... you have what type reads to scaffold? Some people have do evaluation of assembly scaffolding tools( https://rmcsoftwareinc.files.wordpress.com/2015/02/hunt_scaffolding_tools.pdf ) ...
written 5.6 years ago by orange30
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Answer: A: How to run SOAPdenovo-127mer in normal PC
... Increasing  the swap may be useful,but run slower.And i am adoubt that why assembly of chloroplast genome use so many memory.What type of reads do you have?If you have 454 reads,maybe you can see https://www.biostars.org/p/43956/ ...
written 5.6 years ago by orange30
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Answer: A: aligner for CORRECTED pacbio long reads
... pacbio suggest that use blasr or bwa . https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Evaluating-Assemblies ...
written 5.6 years ago by orange30
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Answer: A: PacBio CCS read denovo assembly failed
... may be the formate of ccs file. try to use .gz instead of .zip or don't compress the ccs fastq file. ...
written 5.6 years ago by orange30
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Answer: A: PBcR using less than 25X for error correction in PacBIo
... hi,you can use " assemble = 15 " .use it in command line or spec.file. ...
written 5.6 years ago by orange30

Latest awards to orange

Popular Question 3.9 years ago, created a question with more than 1,000 views. For minia kmer limit
Popular Question 3.9 years ago, created a question with more than 1,000 views. For check if one unitig is truly circual
Popular Question 4.1 years ago, created a question with more than 1,000 views. For fungi diploid genome denovo assembly by pacbio reads

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