User: Azhar

gravatar for Azhar
Azhar30
Reputation:
30
Status:
New User
Location:
China
Last seen:
2 months, 4 weeks ago
Joined:
3 years, 5 months ago
Email:
A**********@gmail.com

Posts by Azhar

<prev • 110 results • page 1 of 11 • next >
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Comment: C: Blast or Blat for multiple sequence alignment to get each respective sequence lo
... Yes I can use bash commands, and blast in linux. your response is informative and i have used blast before, actually i want to use blat for miRNA sequence to get locations for each sequence for hg19. But the i have list of miRNA sequences, according to my information i have to make fasta file for th ...
written 3 months ago by Azhar30
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Comment: C: Blast or Blat for multiple sequence alignment to get each respective sequence lo
... can you just guide me how to do that i never did that just like step wise make a fasta file for 20K seq and run the blast using above stated options then get the locations I am confused about location, will i get the locations for each seq ...
written 3 months ago by Azhar30
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Blast or Blat for multiple sequence alignment to get each respective sequence locations
... I have almost 8000 small RNA sequences, i want to get their Top 20 possible locations using Blast or Blat, for each sequence. Is there any method or script which can be used, Kindly enlighten me ...
next-gen written 3 months ago by Azhar30 • updated 3 months ago by maxime.policarpo20
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Comment: C: link genome browser to locations
... Okay I noted thanks ...
written 8 months ago by Azhar30
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Comment: C: link genome browser to locations
... Thanks for your answer but my question is different.Regards ...
written 8 months ago by Azhar30
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Comment: C: link genome browser to locations
... i want my location to be as hyper link using a formula using http://genome.ucsc.edu/cgi-bin/hgTracks?org=[org]&db=[db]&position=[position] becuase i have number of locations so i want to make a formula so i click and drag easliy for eg chr3:150000-160000:- i want to make this hyper link ...
written 8 months ago by Azhar30
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link genome browser to locations
... Hi Hellow every one, I want to link my excel file with genomic locations, with genome browser and also upload in mysql to visualize, I think easy option is to make hyperlink by using http://genome.ucsc.edu/cgi-bin/hgTracks?org=[org]&db=[db]&posit ...
next-gen written 8 months ago by Azhar30
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FASTA file into excel file format?
... Hi, I have a NCBI fast seq file like >mrna1 gctatatagactgatagctag >mrna2 acgaggctagcggattg for whole Human genome and i want to convert it into excel file format for convenience in analysis or How this can be used in sql format to extract data Please ...
rna-seq written 12 months ago by Azhar30 • updated 12 months ago by Daniel3.6k
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Comment: C: Hypergeometric test ?
... Thanks May I Ask what OP means ? As far as i understand we have done DEG ,GO and other analysis so we want to find out Gene enrichment for disease associated genes in each class or group and see any biasness? ...
written 14 months ago by Azhar30
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Comment: C: sickle output explanation?
... Thanks Istvan Albert I understand that you said above i know offcourse we have to determine from fastqc report for trimming but my question is run the above mentioned command and there nothing happened for long time and then ihave to cntrl c . So my question is i dont know is it worked or not ? b ...
written 14 months ago by Azhar30

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