User: afadda

gravatar for afadda
afadda20
Reputation:
20
Status:
New User
Location:
Qatar
Last seen:
2 years, 2 months ago
Joined:
4 years, 4 months ago
Email:
a*****@sidra.org

Posts by afadda

<prev • 3 results • page 1 of 1 • next >
0
votes
1
answer
1.3k
views
1
answers
Answer: A: Can bwa.kit start from bam file for HLA typing?
... I have the same question. I tried this command but there was no sorted bam files or HLA typing. run-bwamem -o NA12878-hs38 -t 20 -H -s /Hsapiens/hs38DH/hs38DH.fa NA12878_2.fastq.gz NA12878_1.fastq.gz |sh thanks, ...
written 2.2 years ago by afadda20
0
votes
2
answers
3.7k
views
2
answers
Answer: A: Vcftools Runs Of Homozygosity Option
... Hi, I'm running this command: vcftools --LROH --gzvcf file.vcf.gz --out file --chr 1 and getting this log on the screen: VCFtools - v0.1.13 (C) Adam Auton and Anthony Marcketta 2009 Parameters as interpreted: --gzvcf 0200092201_S3_L002.recalibrate_BOTH.vcf.gz --chr 1 --LROH --out /gpfs/projec ...
written 2.7 years ago by afadda20
2
votes
0
answers
4.2k
views
0
answers
ROH by PLINK
... Hi, I'm running the following command to find runs of homozygosity:  plink --bfile path/G02 --homozyg --out path/G02 --allow-no-sex I get this log: Writing this text to log file [ path/G02.log ] Analysis started: Sun May 3 14:16:01 2015 Options in effect: --bfile path/G02 --homozy ...
roh plink written 4.4 years ago by afadda20 • updated 4.2 years ago by Biostar ♦♦ 20

Latest awards to afadda

Popular Question 4.3 years ago, created a question with more than 1,000 views. For ROH by PLINK

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 800 users visited in the last hour