User: Joel

gravatar for Joel
Joel140
Reputation:
140
Status:
New User
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Last seen:
7 years, 6 months ago
Joined:
7 years, 7 months ago
Email:
j****@gmail.com

Posts by Joel

<prev • 7 results • page 1 of 1 • next >
14
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3
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6.1k
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9 follow
3
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Pathway Analysis For List Of Genes
... I have a list of genes and wish to know the pathways in which the expression of these genes is upregulated or downregulated. How do I do this? ...
pathway snp written 7.5 years ago by Joel140 • updated 7.5 years ago by Markus Krupp80
0
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5
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Comment: C: Determine Transcription Factors For Genes
... @casey i am asking which TFs bind to the regulatory regions of a list of genes ...
written 7.6 years ago by Joel140
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5
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Comment: C: Determine Transcription Factors For Genes
... the organism for these genes is Homo sapiens ...
written 7.6 years ago by Joel140
30
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5
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19k
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12 follow
5
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Determine Transcription Factors For Genes
... I have a list of about 500 genes and I have to determine transcription factors for each of these genes. Is there a database from where I could get transcription factors for each of these genes. Thanks. ...
database transcription written 7.6 years ago by Joel140 • updated 23 months ago by krishna.ibioinfo0
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Comment: C: Varscan Error In Pileup2Snp
... The pileup was not generated with -c or -v parameters. Could u please help me and tell how do I do a "head -10" of the pileup file. Thanks ...
written 7.6 years ago by Joel140
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Comment: C: Varscan Error In Pileup2Snp
... could you please elaborate, how do I do that? ...
written 7.6 years ago by Joel140
2
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3.2k
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2
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Varscan Error In Pileup2Snp
... I'm trying to use varscan to call snps on exome sequencing. I generated pileups with samtools vs samtools pileup -f ~/Genomes/hg19/hg19.fa sample1_sorted.bam > sample1.pileup Then java -jar VarScan.v2.2.3.jar pileup2snp sample1.pileup --min-var-freq 0.25 --p-value 0.01 > sample1_var.snp ...
varscan snp pileup written 7.6 years ago by Joel140 • updated 7.6 years ago by Dan Koboldt10

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