User: flamholz

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flamholz10
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Posts by flamholz

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Comment: C: Best local aligner for finding fusion events?
... Brian -- this looks great so far. Can I get BBDuk to output the boundaries of the match? Or does it only output the reads that match and not the position of the match within the read? ...
written 4.2 years ago by flamholz10
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Best local aligner for finding fusion events?
... I am working with sequencing data from a transposon mutagenesis library. I want to identify the exact site of transposon insertion into a plasmid (i.e. 10 kb genome). I have many millions of 100 bp unpaired reads off the plasmid. I have code that aligns to the plasmid and the transposon sequence and ...
alignment transposon written 4.2 years ago by flamholz10 • updated 4.2 years ago by Brian Bushnell16k

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