User: vassialk

gravatar for vassialk
vassialk160
Reputation:
160
Status:
Suspended
Location:
Belarus
Last seen:
2 years, 9 months ago
Joined:
3 years, 4 months ago
Email:
v*******@gmail.com

Posts by vassialk

<prev • 171 results • page 1 of 18 • next >
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Comment: C: What is a full list of the modern robust enough software and tools which are des
... no time to talk ...
written 2.8 years ago by vassialk160
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(Closed) How to call SRATools, BBMAp and VCFTools, NextGene from Java and Python in one command pipeline?
... How to call SRATools, BBMAp and VCFTools, NextGene, Ugene from Java and Python in one command code pipeline? What libraries to use and are there any clear code sample examples, please? ...
vcf wgs sam soft sequencing written 2.8 years ago by vassialk160
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How to convert .gb to fasta (.fa, .fasta format) and is it correct?
... How to convert .gb to fasta (.fa, .fasta format) and is it technically  correct? Need to prepare a reference input for the BBMap software. ...
fasta wgs sequencing written 2.8 years ago by vassialk160 • updated 2.8 years ago by Malcolm.Cook800
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(Closed) What is a full list of the modern robust enough software and tools which are designed to process .vcf format files?
... What is a full list of the modern robust enough software and tools which are designed to process .vcf format files? Know VCF, GATK tools, VCFMiner, NextGene, Ugene, GenPro, DNAStar, CLC WB. ...
vcf sequence wg sequencing written 2.8 years ago by vassialk160 • updated 2.8 years ago by Pierre Lindenbaum112k
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(Closed) What is a full list of the modern robust enough software and tools which are designed to process .sam format files?
... What is a full list of the modern robust  software and tools which are designed to process .sam format files? Know SAMTools and nothing else. Need to further process the BBMap .sam output. Thx. ...
wgs ng sam soft sequencing written 2.8 years ago by vassialk160 • updated 2.8 years ago by Pierre Lindenbaum112k
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News: (Closed) New mobile-friendly website for Tuberculosis research is launched at http://tb-portal.esy.es
... New mobile-friendly website for Tuberculosis research is launched http://tb-portal.esy.es. Your are invited to feedback ideas, critics, suggestions, proposals and to take a question quiz. We will be happy to do a collaborative work with you.   ...
latest news written 2.8 years ago by vassialk160 • updated 2.8 years ago by Lars560
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Answer: A: Error in SNP calling, samtools
... Try the other reliable software like NextGene, CLC, GenPro.... Command line tools lack quality rather often... and have not enough robustness and test experience.... ...
written 2.8 years ago by vassialk160
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Answer: A: TILLING population GWAS methodology
... There are VCF tools, VCF-miner, NextGene, various variant callers, GATK and R packages, finally you can write your own functions in R and Python. Also you can use traditional stat software like JMP and SPSS/STATA, StatsDirect. ...
written 2.8 years ago by vassialk160
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Answer: A: microarray data analysis
... Differences occur. I have used Expander and MeV free software with Cytoscape and limma R for things like that. ...
written 2.8 years ago by vassialk160
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Comment: C: How to call BBMap, SAMTools and GATK from Python or Ruby?
... Thank you -------------------------- ...
written 2.8 years ago by vassialk160

Latest awards to vassialk

Centurion 2.9 years ago, created 100 posts.
Rising Star 3.1 years ago, created 50 posts within first three months of joining.

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