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1
vote
1
reply
12k
views
Answer:
A: Any Local Gui-Guided Blast Tools?
updated 5.2 years ago by
Ram
44k • written 13.6 years ago by
Geparada
★ 1.5k
3
votes
0
replies
2.7k
views
Answer:
A: Searching 200-400Bp Matches Against Mammalian Genome (~Human-Mouse Distance)
updated 5.2 years ago by
Ram
44k • written 13.6 years ago by
Geparada
★ 1.5k
0
votes
0
replies
1.4k
views
Comment:
C: Mapping exonic sequences across species
5.5 years ago by
Geparada
★ 1.5k
0
votes
1
reply
1.4k
views
Comment:
C: Mapping exonic sequences across species
5.5 years ago by
Geparada
★ 1.5k
0
votes
0
replies
1.4k
views
Comment:
C: Mapping exonic sequences across species
5.5 years ago by
Geparada
★ 1.5k
1
vote
6
replies
1.4k
views
Mapping exonic sequences across species
alignment
genome
5.5 years ago by
Geparada
★ 1.5k
0
votes
0
replies
1.3k
views
Comment:
C: How do I find the same gene in two different assemblies?
5.5 years ago by
Geparada
★ 1.5k
0
votes
0
replies
18k
views
Comment:
C: Long read alignment
5.5 years ago by
Geparada
★ 1.5k
0
votes
0
replies
3.2k
views
Comment:
C: Seeking Freelance bioinformatician
5.5 years ago by
Geparada
★ 1.5k
0
votes
0
replies
933
views
Answer:
A: Converting to homologs
5.5 years ago by
Geparada
★ 1.5k
0
votes
0
replies
18k
views
Comment:
C: How to determine if SRA file is single or paired end?
5.9 years ago by
Geparada
★ 1.5k
3
votes
1
reply
4.8k
views
Answer:
A: Filtering sam/bam by using CIGAR deletion sites
5.9 years ago by
Geparada
★ 1.5k
2
votes
0
replies
1.7k
views
Answer:
A: RNA Splicing databases
5.9 years ago by
Geparada
★ 1.5k
0
votes
0
replies
5.5k
views
Comment:
C: How The Non-Canonical Intron Splice Sites Came Out?
5.9 years ago by
Geparada
★ 1.5k
0
votes
0
replies
1.6k
views
Comment:
C: Question on UCSC genome browser display
6.8 years ago by
Geparada
★ 1.5k
0
votes
1
reply
3.0k
views
Comment:
C: rsem-prepare-reference and mouse mm9 genome reference files
6.8 years ago by
Geparada
★ 1.5k
0
votes
0
replies
1.2k
views
What is the proportion of transcripts that are targeted by NMD on vertebrates genomes?
gene expresion
bionumber
RNA-Seq
7.9 years ago by
Geparada
★ 1.5k
3
votes
0
replies
15k
views
Answer:
A: HISAT2 or Tophat2
7.9 years ago by
Geparada
★ 1.5k
2
votes
0
replies
7.0k
views
Comment:
C: Analysis of single-cell RNA-seq data
8.5 years ago by
Geparada
★ 1.5k
21
votes
5
replies
7.0k
views
Tutorial:
Analysis of single-cell RNA-seq data
single-cell
RNA-Seq
updated 20 months ago by
Ram
44k • written 8.5 years ago by
Geparada
★ 1.5k
17
votes
15
replies
17k
views
9 follow
Gencode Gtf To Bed12 Or Psl
ucsc
annotation
gtf
bed
updated 9.0 years ago by
Czh3
▴ 190 • written 13.1 years ago by
Geparada
★ 1.5k
9
votes
12
replies
4.1k
views
Memory leak while reading a bigwig in python
python
bigwig
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
Geparada
★ 1.5k
0
votes
1
reply
4.1k
views
Comment:
C: Memory leak while reading a bigwig in python
9.8 years ago by
Geparada
★ 1.5k
11
votes
6
replies
22k
views
How To Merge Overlapping Two Or More Dna Sequence?
pairwise
sanger
sequencing
updated 2.8 years ago by
Ram
44k • written 13.3 years ago by
Geparada
★ 1.5k
52
votes
21
replies
50k
views
11 follow
Fastq Splitter For Paired End Reads
rna
updated 17 months ago by
Ram
44k • written 12.7 years ago by
Geparada
★ 1.5k
2
votes
1
reply
5.5k
views
Answer:
A: How The Non-Canonical Intron Splice Sites Came Out?
10.3 years ago by
Geparada
★ 1.5k
1
vote
0
replies
4.0k
views
Comment:
Comment: How to remove non canonical introns (junctions) in TopHat/Cufflink
updated 3.1 years ago by
Ram
44k • written 10.3 years ago by
Geparada
★ 1.5k
1
vote
1
reply
4.0k
views
Answer:
Answer: How to remove non canonical introns (junctions) in TopHat/Cufflink
updated 3.1 years ago by
Ram
44k • written 10.5 years ago by
Geparada
★ 1.5k
1
vote
5
replies
3.5k
views
Troubles Installing Qpalma To Run Palmapper ...
next-gen
sequencing
mapping
installation
updated 10.6 years ago by
Biostar
20 • written 13.0 years ago by
Geparada
★ 1.5k
4
votes
5
replies
2.7k
views
Significant Differences Of Motif Enrichment Between Two Different Groups Of Sequences
sequence
motif
enrichment
updated 10.7 years ago by
cherdt
• 0 • written 11.8 years ago by
Geparada
★ 1.5k
17
votes
11
replies
13k
views
What Is The Most Direct Way To Extract The Splice Junctions From A Sam File?
sam
intron
rna
updated 10.7 years ago by
Biostar
20 • written 13.2 years ago by
Geparada
★ 1.5k
5
votes
5
replies
12k
views
Emule "Samtools View" Using Pysam
sam
bam
python
updated 10.9 years ago by
Fidel
★ 2.0k • written 12.5 years ago by
Geparada
★ 1.5k
1
vote
5
replies
4.6k
views
Mapping Trimmed Paired End Reads With Mapsplice
paired-end
next-gen
trimming
updated 11.2 years ago by
Biostar
20 • written 12.7 years ago by
Geparada
★ 1.5k
13
votes
17
replies
7.9k
views
10 follow
Which Program Should I Test To Map Rnaseq Data? Did Anybody Tried Gsnap?
rna
mapping
intron
bowtie
blat
updated 11.2 years ago by
Biostar
20 • written 13.6 years ago by
Geparada
★ 1.5k
2
votes
6
replies
3.8k
views
How To Mount A Ftp Server In A Ec2 Amazon Instance To Host A Uscs Hub?
ucsc
updated 11.3 years ago by
Istvan Albert
102k • written 11.4 years ago by
Geparada
★ 1.5k
0
votes
0
replies
3.8k
views
Comment:
C: How To Mount A Ftp Server In A Ec2 Amazon Instance To Host A Uscs Hub?
11.3 years ago by
Geparada
★ 1.5k
2
votes
1
reply
3.3k
views
Answer:
A: Exons Associated With Multiple "Genes" In Ucsc Genome Data
11.4 years ago by
Geparada
★ 1.5k
0
votes
0
replies
3.8k
views
Comment:
C: How To Mount A Ftp Server In A Ec2 Amazon Instance To Host A Uscs Hub?
11.4 years ago by
Geparada
★ 1.5k
0
votes
1
reply
3.8k
views
Comment:
C: How To Mount A Ftp Server In A Ec2 Amazon Instance To Host A Uscs Hub?
11.4 years ago by
Geparada
★ 1.5k
0
votes
0
replies
7.1k
views
Comment:
C: Visualizing Coverage Of Ngs Reads Across Reference Genome
11.4 years ago by
Geparada
★ 1.5k
0
votes
0
replies
7.7k
views
Comment:
C: Samtools Pipelines
11.4 years ago by
Geparada
★ 1.5k
0
votes
1
reply
7.7k
views
Comment:
C: Samtools Pipelines
11.4 years ago by
Geparada
★ 1.5k
10
votes
6
replies
7.7k
views
Samtools Pipelines
samtools
ngs
pipeline
updated 11.4 years ago by
matted
7.8k • written 11.4 years ago by
Geparada
★ 1.5k
1
vote
0
replies
18k
views
Answer:
A: Bowtie & Tophat
11.7 years ago by
Geparada
★ 1.5k
0
votes
0
replies
2.7k
views
Comment:
C: Significant Differences Of Motif Enrichment Between Two Different Groups Of Sequ
11.8 years ago by
Geparada
★ 1.5k
0
votes
0
replies
4.3k
views
Answer:
A: Problems With A Python Script Used To Simulate Protein Cutting By Trypsin
11.8 years ago by
Geparada
★ 1.5k
0
votes
1
reply
10k
views
Comment:
C: Any Script To Parse Fasta Headers?
11.9 years ago by
Geparada
★ 1.5k
2
votes
1
reply
15k
views
Answer:
A: Visualize Strand-Specific Rna-Seq : How To Differentiate Strands
11.9 years ago by
Geparada
★ 1.5k
1
vote
0
replies
9.5k
views
Answer:
A: How To Map The Fastq With Paired-End Seq Combined In One File
11.9 years ago by
Geparada
★ 1.5k
0
votes
0
replies
4.6k
views
Comment:
C: Mapping Trimmed Paired End Reads With Mapsplice
11.9 years ago by
Geparada
★ 1.5k
143 results • Page
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