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questions
1
vote
6
replies
1.3k
views
Mapping exonic sequences across species
alignment
genome
5.2 years ago by
Geparada
★ 1.5k
0
votes
0
replies
1.2k
views
What is the proportion of transcripts that are targeted by NMD on vertebrates genomes?
gene expresion
bionumber
RNA-Seq
7.6 years ago by
Geparada
★ 1.5k
17
votes
15
replies
16k
views
9 follow
Gencode Gtf To Bed12 Or Psl
ucsc
annotation
gtf
bed
updated 8.8 years ago by
Czh3
▴ 190 • written 12.8 years ago by
Geparada
★ 1.5k
9
votes
12
replies
4.0k
views
Memory leak while reading a bigwig in python
python
bigwig
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
Geparada
★ 1.5k
11
votes
6
replies
21k
views
How To Merge Overlapping Two Or More Dna Sequence?
pairwise
sanger
sequencing
updated 2.6 years ago by
Ram
44k • written 13.0 years ago by
Geparada
★ 1.5k
52
votes
21
replies
50k
views
11 follow
Fastq Splitter For Paired End Reads
rna
updated 14 months ago by
Ram
44k • written 12.4 years ago by
Geparada
★ 1.5k
1
vote
5
replies
3.5k
views
Troubles Installing Qpalma To Run Palmapper ...
next-gen
sequencing
mapping
installation
updated 10.3 years ago by
Biostar
20 • written 12.8 years ago by
Geparada
★ 1.5k
4
votes
5
replies
2.6k
views
Significant Differences Of Motif Enrichment Between Two Different Groups Of Sequences
sequence
motif
enrichment
updated 10.4 years ago by
cherdt
• 0 • written 11.5 years ago by
Geparada
★ 1.5k
17
votes
11
replies
13k
views
What Is The Most Direct Way To Extract The Splice Junctions From A Sam File?
sam
intron
rna
updated 10.5 years ago by
Biostar
20 • written 13.0 years ago by
Geparada
★ 1.5k
5
votes
5
replies
11k
views
Emule "Samtools View" Using Pysam
sam
bam
python
updated 10.6 years ago by
Fidel
★ 2.0k • written 12.3 years ago by
Geparada
★ 1.5k
1
vote
5
replies
4.5k
views
Mapping Trimmed Paired End Reads With Mapsplice
paired-end
next-gen
trimming
updated 10.9 years ago by
Biostar
20 • written 12.4 years ago by
Geparada
★ 1.5k
13
votes
17
replies
7.7k
views
10 follow
Which Program Should I Test To Map Rnaseq Data? Did Anybody Tried Gsnap?
rna
mapping
intron
bowtie
blat
updated 10.9 years ago by
Biostar
20 • written 13.4 years ago by
Geparada
★ 1.5k
2
votes
6
replies
3.7k
views
How To Mount A Ftp Server In A Ec2 Amazon Instance To Host A Uscs Hub?
ucsc
updated 11.1 years ago by
Istvan Albert
101k • written 11.1 years ago by
Geparada
★ 1.5k
10
votes
6
replies
7.7k
views
Samtools Pipelines
samtools
ngs
pipeline
updated 11.2 years ago by
matted
7.8k • written 11.2 years ago by
Geparada
★ 1.5k
27
votes
10
replies
6.2k
views
Which Useful Debian-Like Repositories Do You Know?
linux
bioconductor
updated 12.5 years ago by
Casey Bergman
18k • written 13.2 years ago by
Geparada
★ 1.5k
17
votes
4
replies
6.8k
views
Fastq With Format Errors
fastq
format
python
rna
biopython
updated 12.5 years ago by
Bach
▴ 550 • written 12.5 years ago by
Geparada
★ 1.5k
1
vote
2
replies
3.6k
views
Liftover Of Na12878 Coordinates Into Hg19 Coordinates
vcf
liftover
bed
updated 12.7 years ago by
Pierre Lindenbaum
163k • written 12.7 years ago by
Geparada
★ 1.5k
18
votes
8
replies
6.2k
views
Getting The Error Probability Statistics From A (Large) Fastq File
fastq
python
next-gen
sequencing
statistics
updated 12.9 years ago by
lh3
33k • written 12.9 years ago by
Geparada
★ 1.5k
28
votes
19
replies
15k
views
10 follow
How To Generate Mutations In Sequences Of A Fasta File?
fasta
python
mutation
sequence
updated 14 months ago by
Ram
44k • written 13.0 years ago by
Geparada
★ 1.5k
16
votes
10
replies
5.2k
views
What Is The Best Way To Simulate Reads From Reference Transcriptome With Certain Error Rate?
next-gen
sequencing
read
alignment
updated 13.3 years ago by
2184687-1231-83-
★ 5.1k • written 13.3 years ago by
Geparada
★ 1.5k
12
votes
3
replies
5.8k
views
What Script (Or Program) Should I Use To Filter Low Complexity And Repetitive Reads From Rna-Seq?
next-gen
sequencing
rna
read
repeatmasker
updated 13.3 years ago by
2184687-1231-83-
★ 5.1k • written 13.3 years ago by
Geparada
★ 1.5k
26
votes
12
replies
18k
views
9 follow
Which Are The Best Collections Of Bioinformatics Tools For Ngs Analysis And Sequence Files Management?
next-gen-sequencing
updated 2.1 years ago by
Ram
44k • written 13.3 years ago by
Geparada
★ 1.5k
19
votes
12
replies
7.5k
views
How To Scramble A Sequence Using An Existing Script Or A Python Method?
python
mapping
sequence
next-gen
sequencing
updated 13.3 years ago by
Martin A Hansen
3.0k • written 13.3 years ago by
Geparada
★ 1.5k
23 results • Page
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