User: ramanandan.prabhakaran

Reputation:
20
Status:
New User
Location:
Canada
Last seen:
4 years, 6 months ago
Joined:
4 years, 10 months ago
Email:
r*********************@gmail.com

Posts by ramanandan.prabhakaran

<prev • 6 results • page 1 of 1 • next >
0
votes
0
answers
1.5k
views
0
answers
Comment: C: A: comparing vcf files of disease (affected) and normal (unaffected) samples
... Thanks Ashutosh for your suggestion. ...
written 4.5 years ago by ramanandan.prabhakaran20
2
votes
0
answers
1.5k
views
0
answers
A: comparing vcf files of disease (affected) and normal (unaffected) samples
... Dear friends, My requirement is to find list of variants which are present in affected but not in unaffected samples, then I have to prepare a list For example,  Samples           4:1243-SNV     5:1277-SNV       15:4070-SNV    ….. ….. …… …… ….. …..      16:5335-SNV  A(affected)          C_T       ...
vcf variant calling genotype snp written 4.6 years ago by ramanandan.prabhakaran20
0
votes
3
answers
3.2k
views
3
answers
Answer: A: comparing vcf files of disease and normal samples
... Hi Goutham, My requirement is also some what similar to yours. I have to find snps which are present in affected but not in unaffected samples, then I have to prepare a list For example, Samples 4:1243-SNV 5:1277-SNV 15:4070-SNV ..... ..... ...... ...... ..... ..... ...
written 4.6 years ago by ramanandan.prabhakaran20 • updated 4 months ago by RamRS26k
1
vote
1
answer
5.2k
views
1
answers
Comment: A: Informatics of RNA-Seq.
... Thanks Goutham Atla for suggesting a wonderful material. Also I would like to thank Griffithlab for coming up with such a useful resources.   ...
written 4.6 years ago by ramanandan.prabhakaran20
0
votes
3
answers
4.4k
views
3
answers
Answer: A: MEGAN and Kraken for taxonomy classification
... Thanks Phil for providing me a nice explanation. I am new to metagenomics field. I would like to generate synthetic reads similar to 454 or Illumina. I figured out MetaSim can generate it. But I have doubt, can we use gene sequences (fasta format) from NCBI as a input to generate synthetic reads in ...
written 4.9 years ago by ramanandan.prabhakaran20
0
votes
3
answers
4.4k
views
3
answers
Answer: A: MEGAN and Kraken for taxonomy classification
... Hi Deepthi, I am also working on kraken to build my own custom DB. As you mentioned in the above post, you built your database consisting of bacteria, virus and fungi. Even my requirement is to build custom DB with the same three species.  1) Can you help me with that custom DB? 2) Can I use RefS ...
written 4.9 years ago by ramanandan.prabhakaran20

Latest awards to ramanandan.prabhakaran

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 779 users visited in the last hour