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Posts by Jennifer
... Is it possible to compare gene expressions of two types of sequencing data, i.e. treated samples that are paired-end 50bp and untreated samples that are single-end 40bp? My idea is to get read counts from HTSeq-count, followed by DESeq2. HTSeq-count counts paired-end data as read pairs, therefore a ...
... I will try that out, thank you so much! ...
... Hi everyone, I did the alignment of RNA seq reads to a number of reference genomes at once, which include the human genome and some bacterial genomes, and now I have one SAM file of all the mapped reads. What I need to do next is to count the number of reads that mapped to only bacterial genomes ( ...
Latest awards to Jennifer
Popular Question 3.9 years ago, created a question with more than 1,000 views. For Remove specific mapped reads from SAM file
Popular Question 3.9 years ago, created a question with more than 1,000 views. For differential expression analysis-- paired-end and single-end
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