User: Jennifer

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Jennifer0
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Posts by Jennifer

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differential expression analysis-- paired-end and single-end
... Is it possible to compare gene expressions of two types of sequencing data, i.e. treated samples that are paired-end 50bp and untreated samples that are single-end 40bp? My idea is to get read counts from HTSeq-count, followed by DESeq2. HTSeq-count counts paired-end data as read pairs, therefore a ...
rna-seq written 3.9 years ago by Jennifer0 • updated 3.9 years ago by geek_y11k
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Comment: C: Remove specific mapped reads from SAM file
... I will try that out, thank you so much!  ...
written 5.2 years ago by Jennifer0
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Remove specific mapped reads from SAM file
... Hi everyone,  I did the alignment of RNA seq reads to a number of reference genomes at once, which include the human genome and some bacterial genomes, and now I have one SAM file of all the mapped reads. What I need to do next is to count the number of reads that mapped to only bacterial genomes ( ...
alignment written 5.2 years ago by Jennifer0 • updated 5.2 years ago by Brian Bushnell17k

Latest awards to Jennifer

Popular Question 3.9 years ago, created a question with more than 1,000 views. For Remove specific mapped reads from SAM file
Popular Question 3.9 years ago, created a question with more than 1,000 views. For differential expression analysis-- paired-end and single-end

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