User: manekineko

gravatar for manekineko
manekineko90
Reputation:
90
Status:
Trusted
Location:
Bulgaria
Last seen:
1 day, 15 hours ago
Joined:
3 years, 2 months ago
Email:
v*****@plantgene.eu

Posts by manekineko

<prev • 90 results • page 1 of 9 • next >
0
votes
0
answers
219
views
0
answers
Comment: C: Early Stage Researcher (with PhD option) - Bioinformatics (Marie-Curie Actions H
... Deadline is extended till 10 August. ...
written 1 day ago by manekineko90
0
votes
0
answers
219
views
0
answers
Job: Early Stage Researcher (with PhD option) - Bioinformatics (Marie-Curie Actions H2020)
... We are looking for one enthusiastic PhD student to join our team at the University of Plovdiv, located in Plovdiv, BULGARIA. The research position is part of a Marie Skłodowska-Curie Innovative Training Network titled “ELBA: European Liquid Biopsies Academy - Towards widespread clinical application ...
msc job phd bioinformatics marie curie written 7 days ago by manekineko90
0
votes
0
answers
338
views
0
answers
Comment: C: LoFreq outputing no SNP?
... I have run the BAM in Geneipus and found maybe the reason why in some tools they are disappearing. For example, the one of the SMP are mostly from reverse reads, so if I checked options for strand-bias the SNP probably are trow out. But in my case, I do not know what should be the option as the samp ...
written 7 months ago by manekineko90
0
votes
0
answers
338
views
0
answers
Comment: C: LoFreq outputing no SNP?
... The strange thing is that even with the option "Disable use of base-alignment quality (BAQ)" LoFreq does not report any SNP ...
written 7 months ago by manekineko90
0
votes
0
answers
338
views
0
answers
Comment: C: LoFreq outputing no SNP?
... I'm exploring this in IGV, I have explored the Phred quality of the sample and see that plot shows quality above 35. ...
written 7 months ago by manekineko90
0
votes
0
answers
338
views
0
answers
LoFreq outputing no SNP?
... Hi, I'm trying to use LoFreq for viral data (BAM), when I know there is a low-frequency SNP for example at a particular position 30.000 reads with original nt and 1500 reads containing SNP which makes ~3% frequency of a viral variant, but LoFreq is outputting no SNP found? Can someone with more expe ...
lofreq written 7 months ago by manekineko90 • updated 5 months ago by Biostar ♦♦ 20
0
votes
1
answer
322
views
1
answers
Comment: C: Help downloading pepper genome (I have bad speed connection)
... many thanks, the SOL works bit better :) ...
written 8 months ago by manekineko90
2
votes
1
answer
322
views
1
answer
Help downloading pepper genome (I have bad speed connection)
... Hi, can someone help me get the pepper genome as I have very bad speed (2-3kb) and connection drops from the particular location/server? ftp://public.genomics.org.cn/BGI//pepper/Capsicum.annuum.L_Zunla-1_Release_2.0.fasta.gz If someone can upload it temporarily elsewhere it will be great? Many th ...
capsicum genome pepper written 8 months ago by manekineko90
0
votes
1
answer
277
views
1
answer
16s analysis MySeq PE - analysis of only forward reads?
... Dear all, I have information from a company that 16s V3-V5 metagenomics data from MiSeq PE 2x300 and they analyze only the Forward reads from the sample (no joining the reads). I was wondering which approach can be more accurate - joining the reads and losing some reads or using only the forwards? ...
16s metagenomics written 8 months ago by manekineko90 • updated 8 months ago by Asaf4.8k
0
votes
3
answers
351
views
3
answers
Comment: C: Uncollapsing FASTA file
... Many thanks! I'm testing the awk and seems to got the right files I want :) ...
written 8 months ago by manekineko90

Latest awards to manekineko

Popular Question 6 months ago, created a question with more than 1,000 views. For Check is RNA-seq mapping (tophat) is performed ok (hg38)?
Popular Question 6 months ago, created a question with more than 1,000 views. For multiple paired-end files for one sample?
Popular Question 6 months ago, created a question with more than 1,000 views. For Deseq web-based (with GUI)
Popular Question 6 months ago, created a question with more than 1,000 views. For bowtie options for exact match with reference short sequence
Popular Question 6 months ago, created a question with more than 1,000 views. For Removing barcode and adapters?
Popular Question 6 months ago, created a question with more than 1,000 views. For Problems with STAR mapping output
Popular Question 6 months ago, created a question with more than 1,000 views. For htseq-count counts all reads as no_feature
Popular Question 7 months ago, created a question with more than 1,000 views. For multiple paired-end files for one sample?
Popular Question 7 months ago, created a question with more than 1,000 views. For multiple paired-end files for one sample?
Popular Question 8 months ago, created a question with more than 1,000 views. For multiple paired-end files for one sample?
Popular Question 8 months ago, created a question with more than 1,000 views. For multiple paired-end files for one sample?
Popular Question 16 months ago, created a question with more than 1,000 views. For multiple paired-end files for one sample?
Popular Question 16 months ago, created a question with more than 1,000 views. For Deseq web-based (with GUI)
Popular Question 16 months ago, created a question with more than 1,000 views. For Removing barcode and adapters?
Student 16 months ago, asked a question with at least 3 up-votes. For Extending ends of sequences with the help of reads?
Popular Question 18 months ago, created a question with more than 1,000 views. For multiple paired-end files for one sample?
Popular Question 20 months ago, created a question with more than 1,000 views. For multiple paired-end files for one sample?
Popular Question 20 months ago, created a question with more than 1,000 views. For Problems with STAR mapping output
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Mean insert size and Mean inner distance between mate pairs
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Mean insert size and Mean inner distance between mate pairs
Supporter 3.0 years ago, voted at least 25 times.
Rising Star 3.0 years ago, created 50 posts within first three months of joining.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1301 users visited in the last hour